Basic Information

Insect: Bombyx mori
Gene Symbol: -
Assembly: GCA_027497135.1
Location: CP114953.1:18385276-18392909[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.067 3.7 8.2 3.0 1 23 299 322 299 322 0.96

2 7 0.31 17 6.1 2.1 1 23 329 351 329 351 0.86

3 7 7.2e-05 0.004 17.5 0.4 2 23 358 379 357 379 0.96

4 7 2.5e-05 0.0014 19.0 3.5 1 23 385 407 385 407 0.98

5 7 0.00015 0.0082 16.6 2.9 1 23 413 435 413 435 0.97

6 7 1.6e-05 0.00087 19.6 2.5 1 23 441 463 441 464 0.95

7 7 0.00015 0.0084 16.5 0.8 1 20 482 501 482 505 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.067	3.7	8.2	3.0	1	23	299	322	299	322	0.96
2	7	0.31	17	6.1	2.1	1	23	329	351	329	351	0.86
3	7	7.2e-05	0.004	17.5	0.4	2	23	358	379	357	379	0.96
4	7	2.5e-05	0.0014	19.0	3.5	1	23	385	407	385	407	0.98
5	7	0.00015	0.0082	16.6	2.9	1	23	413	435	413	435	0.97
6	7	1.6e-05	0.00087	19.6	2.5	1	23	441	463	441	464	0.95
7	7	0.00015	0.0084	16.5	0.8	1	20	482	501	482	505	0.97

Sequence Information

Coding Sequence: ATGGCCGAAAAAAGTGCAATGAACTCTCTGATGGAAGTGGAGCATTTTAATTCCTCGTCCGTGGACGTGGGCATCAAGAAGGAGGTTGTAGTGAAGCCGGAACCTTGTGAGTGTCTCGTGTGCGTAACTCGCAGTCAGGACTGCTATGATATATACACAACAAACACGACAGCGTCGGGCACGAGCCTTCTTACATTCTTGGCTAAATTCACTCAGACGGATATCACTGACGCAGTAAAGTCCTCCAAACACGTTTGCAAGAATTGCCTAGACCTAATCAACATTTTAGATCAGGCTGAAATAGAATATGTTAAGCTAAAAGAGGCATTTGAAGCAATAATAAGTAAAAACCCTCTATTTGTGTCATCAAATGTGCCTTTAAAATTAACTACTGTAAAGGCTGAGTACAATGATGATGAAGATGATGATGATGATGATGATGACGATGATGTGTCGGTACATTTTAATAATTTAGAAGAGGATTCTGAAGATGAGCCATTAGTAAAGTGTAAGAGGAAAAGAAAAGTCCAGGTTAAGAAAAATTGTACAACTGCTAAACATACACCTAATAGCAAAAAATTTGAGGGAAGCTGGAAATGTGAATTATGCGGTGAGACTGGAGATAAAGGTGGTACTAATGCTGAAGAAGCTCACAGATTATCAGTACACTCTGGTATGAATTCAGGGAATAATGGAGCTTTTAATGATGTCAAGACTGAAGATTCAGCTGATGGTTCAGAAAGTCCATTTAAATACACATTTAAGGAATCGCTCCTCTTGGCACTTGGTAATCTGGATGAATCTAGTAAAGGAGATGAAAAAATAAAAAAGAAAAAAACTAAAGCAACACGGAAGAAAAAGAAAGTATTAAAAGACACAAAAACGAAAGTAATGCATCAGTGTGATCAGTGTACTAACAGGTATACTTCCTTAGTACGTTTGGAGCGTCACAAACAAATTAAACATGAAGGTTCGAAGCCTCCTTACATCTGTGAGATATGTGGCGCGCACTACAAACACAAGCGAGCCTGCGACATACACATAGCTCTACACAAGGGTATAAGCGATTGGAAATGTGAAGAGTGCAATAAACTGTTTCCTTCAAAGAATGCACTCCAGAGGCATAACAACATCCACACGGGGAAGCTCAACTATCAGTGCGACCTGTGCGGCAAGTCCTTCATCCACACGTCGTCGTTCAAGATGCACAAGCTCTCGCACTCCGGCGTGAAGCCGCACTCGTGCGACGTGTGCGGGCTGGCGCTCATGACGCGCTCGCACCTCAAGCGACACAAGCGCGTGCACAGCGGCGAGAAGCGCCACGAGTGCGCGCTCTGCGGGAAGCGCTTCTCGGAGAGGTACAACCTCATGGCGCACGCCAAATCGCACCACGGGCCCGAGGCGCGCGCCGCCGAGCCGCCGCGCCCCGAGCGCCGCCGCCTCTTCCGCTGCCACTTCTGTCCCGAGAGATACGAGAGACGGTACATGCTGGAGCGGCACATGCCGGCGGCGCACGGGCGCACGCTGGAGCGGCCGCCGCCCACGCCGCGGAACACCATGAGCAAGATGCTGAAGGCGCAGGCGCTCGGCAAGCGCGCCGCCCGCCCGACAGCAACGGTgacacgcaatattattattaactctatatttaacgagtaa
Protein Sequence: MAEKSAMNSLMEVEHFNSSSVDVGIKKEVVVKPEPCECLVCVTRSQDCYDIYTTNTTASGTSLLTFLAKFTQTDITDAVKSSKHVCKNCLDLINILDQAEIEYVKLKEAFEAIISKNPLFVSSNVPLKLTTVKAEYNDDEDDDDDDDDDDVSVHFNNLEEDSEDEPLVKCKRKRKVQVKKNCTTAKHTPNSKKFEGSWKCELCGETGDKGGTNAEEAHRLSVHSGMNSGNNGAFNDVKTEDSADGSESPFKYTFKESLLLALGNLDESSKGDEKIKKKKTKATRKKKKVLKDTKTKVMHQCDQCTNRYTSLVRLERHKQIKHEGSKPPYICEICGAHYKHKRACDIHIALHKGISDWKCEECNKLFPSKNALQRHNNIHTGKLNYQCDLCGKSFIHTSSFKMHKLSHSGVKPHSCDVCGLALMTRSHLKRHKRVHSGEKRHECALCGKRFSERYNLMAHAKSHHGPEARAAEPPRPERRRLFRCHFCPERYERRYMLERHMPAAHGRTLERPPPTPRNTMSKMLKAQALGKRAARPTATVTRNIIINSIFNE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00236226; iTF_01490502;
90% Identity: iTF_00236226;
80% Identity: -