Basic Information

Insect: Bombyx mori
Gene Symbol: -
Assembly: GCA_027497135.1
Location: CP114954.1:5383640-5395661[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0061 0.34 11.5 4.1 1 23 264 287 264 287 0.94

2 10 0.00033 0.018 15.5 3.0 1 23 393 415 393 415 0.99

3 10 3.4 1.9e+02 2.9 3.4 2 20 424 442 423 446 0.94

4 10 0.47 26 5.5 3.0 1 23 450 472 450 472 0.98

5 10 7.9e-05 0.0044 17.4 1.7 1 23 477 500 477 500 0.97

6 10 2.2 1.2e+02 3.4 1.2 3 22 506 525 505 527 0.75

7 10 0.036 2 9.1 0.3 3 23 616 637 614 637 0.95

8 10 2.8e-06 0.00015 22.0 1.2 1 23 646 668 646 668 0.98

9 10 2.9e-05 0.0016 18.8 0.2 1 23 674 696 674 696 0.98

10 10 3e-05 0.0017 18.7 4.6 1 23 702 725 702 725 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0061	0.34	11.5	4.1	1	23	264	287	264	287	0.94
2	10	0.00033	0.018	15.5	3.0	1	23	393	415	393	415	0.99
3	10	3.4	1.9e+02	2.9	3.4	2	20	424	442	423	446	0.94
4	10	0.47	26	5.5	3.0	1	23	450	472	450	472	0.98
5	10	7.9e-05	0.0044	17.4	1.7	1	23	477	500	477	500	0.97
6	10	2.2	1.2e+02	3.4	1.2	3	22	506	525	505	527	0.75
7	10	0.036	2	9.1	0.3	3	23	616	637	614	637	0.95
8	10	2.8e-06	0.00015	22.0	1.2	1	23	646	668	646	668	0.98
9	10	2.9e-05	0.0016	18.8	0.2	1	23	674	696	674	696	0.98
10	10	3e-05	0.0017	18.7	4.6	1	23	702	725	702	725	0.98

Sequence Information

Coding Sequence: ATGTTGGATTTAAAGGCCTGTTTTGTATGCTTTAGTGTTGAAACAAAGTTAATTAATTTGGATCGAGAGAAAGTGAGAAAAGATTTTAACTTGATTTCCGGTCTTCAGACTAAGCCTGGTGAAGGCCTTCCAGAATACTTAGCTCATTTTGCTTTACAAGAAATTCTGCAAAACTGTAAAGAGATAAAAACATATCACTTAACATCATTTGATGGAAAACGTCTGGGCATTGGACCCCAGCTATCCTATGTGGACCTAGACAAAACTCACTATGAACAAACAAAATTTCAATGGGTGAAACATAATCGGATCATTACAACTACAGGTGACATAATCCCAGTAGCTCACTGCAGTACACTGGCAAACCAAGACATATTTTTTGAAATAGAAGTAAAGAATAATGAATTATCTGAGAAAGTCAAAACAGAAGTTGTAGAAGAGCAATTTGTGAAAAGTTTTACAAAAAATGAAACATATGAAGACACAAATCTAGATGCCGGAGCTGATGATGATTATTATGACACAGAAGTTCAGAATGACAGTGATGGCCAGGAGACATTATTTCCTGTTATGTCTTGTGACATTAATAAGGATGAAAATGACAAGGCCGATGAGGAATACGCAAATGTATATCCTATATCAGTGAAAGAAGCAAAAGCAGCATTAGAGGTTCATAGGTTGTATAGCAGTAATGGGAAGCATATGTGTTCAATTTGTAGTAAAAGACATAACAGTGCCGAACGTCACAAAATACATTTGAGGATGCATGATAAGCACATTAGCGGCAAATATCATTGCAAAATATGTAATTATTATTACAAAACGGAATTTCTTCTACAGTCACACATGACTGAGAAACACATGTACAAATATGTTTGTACTAAATGTAAGGAGGTCAATTTTGATAGAGCTTCAGCAAAACAGCATTTCATATGGACTCACATGCAGAAAGGACACAAAAAAGATGATACTTGGTACAAAAACAGACCGACGTGGCTTAGTTCCAGAGGAGGCAAACGGATTAAAGGCTCAAAACACAGCAAAACTCCTGTGACTACCAGTAGAAAATTCTCAAAGCTTCCGGAAGACTTCCTAGTTTATTCTCCCATAAGTCATTTAGAACAATACCAGCTAGTACAGGACAGAAAAAAGACAAATAACTATTTGGATTCACTTTTCAAATGCGAACTGTGTTATAGAGGCTTTAGGGAATCCACTACATATGAAAAGCATATGAAGAAACATGATCCGACCGTATCTGGTAATGTTCAATGTGATATGTGCAAACTGTATTTCTTGAATCAAAGGAAACTCTACAAGCATATGAGTTGTACGCATCTATTCAAGTATTCATGTCGTTTGTGCAGTTTCGTATGCGTCAATAGGGGTCAAGCGCATGCGCATTACAGATGGCACAAAAATGTAACGTACCCCTGTCCGCACTGTGATAAAGTATTCAAAAAAATATCAACGCAGCTAACACACATACGACTGAAACACCCTTCGAACAACATCTGCAATCTGTGCGGGCACAGCTTCGTCGGTGAGAACGGACTGTACTGTCACAAGCAGATCGCGCACTCAGTAGAGGAGAGGGAACTGAGTCAGTCTGTGTCTGTGAACCCTTCGGACTCCATGTACTGTGCCGCCTGCGGGATACAGTTCCTCAACGAGGAAGCGTTCAACACGCATCTGGGCAGCTCCAATAAACACGCCACCGTCAATGAGTCGATACTGATGAAGCGCAAGCCGGGCGCGGCGCGGGGCGGGGGGCGCGGGCGGCCGGCGCGCACGCACGCGCTCGCCTCGCACATCGTCAACAACGGGCTCACCACCTCCACCAACTGTGAAGTCTGCGGCAAGTTCCTGTCGAACGACGTGCAGGCGCGCAAGCATTACGAGACCGAGCACCCCGGCACCGAGTACCTCAAGCGGTACATGTGCGACGTGTGCGGACACACCACGCGGCAATACGCGAACCTGATGGTCCACATGCGGACGCACACGAATGAGAAGCCGTACGAGTGTCCGCAGTGCGACCGGAGGTTCAGCATGCCCAGCAACCGAGACAGGCACATAGCGGTCCACACCGGCGAGAAGCGTTACCAGTGTCACCACTGCAACAGACGGTTCACGCAGAGCAACGCGGTGAAGCTTCACATCCAGACCGTTCACCTGAAGATCCCCTACGCGCCCTGGGACAAGAAGAACCGGAAGCGGCGCAAAGACGTGGAGCCTGCCCCCGCGCCCCCCGCGCTGCCCTGCCCCCCGCCGCAACACAAGGTGCTGCTGGAGGCGCAGGGAGACTACCTCAACGCCTACATCACGTACAACGATGTGTGA
Protein Sequence: MLDLKACFVCFSVETKLINLDREKVRKDFNLISGLQTKPGEGLPEYLAHFALQEILQNCKEIKTYHLTSFDGKRLGIGPQLSYVDLDKTHYEQTKFQWVKHNRIITTTGDIIPVAHCSTLANQDIFFEIEVKNNELSEKVKTEVVEEQFVKSFTKNETYEDTNLDAGADDDYYDTEVQNDSDGQETLFPVMSCDINKDENDKADEEYANVYPISVKEAKAALEVHRLYSSNGKHMCSICSKRHNSAERHKIHLRMHDKHISGKYHCKICNYYYKTEFLLQSHMTEKHMYKYVCTKCKEVNFDRASAKQHFIWTHMQKGHKKDDTWYKNRPTWLSSRGGKRIKGSKHSKTPVTTSRKFSKLPEDFLVYSPISHLEQYQLVQDRKKTNNYLDSLFKCELCYRGFRESTTYEKHMKKHDPTVSGNVQCDMCKLYFLNQRKLYKHMSCTHLFKYSCRLCSFVCVNRGQAHAHYRWHKNVTYPCPHCDKVFKKISTQLTHIRLKHPSNNICNLCGHSFVGENGLYCHKQIAHSVEERELSQSVSVNPSDSMYCAACGIQFLNEEAFNTHLGSSNKHATVNESILMKRKPGAARGGGRGRPARTHALASHIVNNGLTTSTNCEVCGKFLSNDVQARKHYETEHPGTEYLKRYMCDVCGHTTRQYANLMVHMRTHTNEKPYECPQCDRRFSMPSNRDRHIAVHTGEKRYQCHHCNRRFTQSNAVKLHIQTVHLKIPYAPWDKKNRKRRKDVEPAPAPPALPCPPPQHKVLLEAQGDYLNAYITYNDV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00236223;
90% Identity: iTF_00236223;
80% Identity: -