Bmor002729.1
Basic Information
- Insect
- Bombyx mori
- Gene Symbol
- -
- Assembly
- GCA_027497135.1
- Location
- CP114958.1:704828-710337[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.037 2.1 9.0 1.5 1 21 470 490 470 494 0.90 2 12 0.0095 0.53 10.9 5.6 1 23 508 531 508 531 0.97 3 12 0.63 35 5.2 0.8 1 23 536 560 536 560 0.91 4 12 7.5 4.2e+02 1.8 1.0 2 23 582 606 581 606 0.74 5 12 0.00027 0.015 15.8 0.3 2 22 612 632 611 632 0.95 6 12 1.8e-05 0.00097 19.5 1.0 1 23 690 711 690 711 0.98 7 12 5.7e-05 0.0032 17.9 0.4 1 23 717 740 717 740 0.96 8 12 0.00048 0.027 14.9 0.1 2 20 763 781 762 783 0.93 9 12 0.0094 0.52 10.9 0.8 2 23 796 819 795 819 0.97 10 12 0.1 5.8 7.6 5.9 1 21 826 846 826 848 0.94 11 12 0.019 1.1 9.9 1.2 3 21 856 874 854 879 0.92 12 12 5.1e-05 0.0029 18.0 1.3 1 23 885 908 885 908 0.98
Sequence Information
- Coding Sequence
- ATGTTATCTCTCCGCGATGATGATGACGACAAACATCTCTGCATCAAATGTAACGCCACAATCGTAGGCCTGGACAGCTACATTAAGCACAGAAAAGACAAGTGCGGCAAGGCCAAAGTCAACAAGAGACCTGATCTACCGCCAATCGACACTCTCGACCCAAGCTGCAGTTTGGGTGCTGACATCTTCTTCCAATCTCTAGAACTCCAAAGCAGTGTGAAAAAGACAAGTCTCACCCCACCCGTTCCTACAACGAAACCTTCTGATAGTAAGAATGCACCGTCCACATCCAGTCAAAGAGTAAGCCCACTGGATAGCCGAGGTGAACACTGGATCGGAGGCCACAGTTTGACCACAGATACCAGTGTAGACAATCATACTAAACTAATCAATGCCGTTGCAAGTATAAGCGGTTCTGTAAAGAAAGATGTTTCTTTTGATCTATACGACGAAAGTGATGATTCGGAAGGCTCTGAGGACGATGACGACGATGAACACGCTAGCGGTCAAAAATGGAAACCGCCACCGAATTATACAGGAGGTAAATGGAGACCAACTTCACCCGACCAAGCTTGGAATCCAAACGATGGCGAGCAGACCGGTAAATGGAAATCAGATTTACCAGATCGCGATGAAGATGATGAAACTCCACCTCCAGGGCATACTAAAGGCAAATGGGTACCTGGAGCCAATGAGAAAACCCAGATTATGCAACCAATCATTCAGAGTAAGGGCTCCATACAGTACTGGTGTGGTCCTTGCAACAGACGACTTGGTTCCCGAGCGGTTTACGACAAACATTTAAAATCCAGCTTACATATAAAGAAAGTTCTTCCCGAACGTGAATTGGAATATTCTGGTCATTTAAAACCAATCAAACCGAAGCGCACCATTCGTCCGTCTCGGTTTGTTAACGATGGTATATACACTCGCACTCAGAGGAAAAAAACAAAATCCACGAAAGTAAGCGTCAAAATACAATTGAAGAAGCGTAAAAGGAAAACTACTTTCATCCGTTGTATCGGTTGTGACTCCAGGGTGAGACGACACTTGATGGGCAAGCACTTGATTTCCCACTACCACTTTAGAAAAACAACCGCCGTAGATAGCGAAGTTTATCAAAAGCTCATACTCGACAACATTGTGGCTATAGTACACCAATCACCCTTCCAATGCAATCCATGCAAGTTTTACACTAATTGGCTATCGAATTTTATGCAGCATTGGTTCACAGAAGAACATCAAGAGAAAACAAATTTAATTGAGGGTAGATTCTGGTGTTCTTTTTGTAAATTCGAATGCGAGACTTCTCAAGAGATGCTTGACCATTTATCGAGTCCAACTCATAGTGAAGCTGTGGCCGTCGTCAACAGATCCATGCCGATCATCATAAGGAAGAAGACAATCTTCAAATGTGAGACTTGTTCAATGGAGTTTAAATATAATATTGAGATGAAGAAGCACAGCATCAAAACAAGTCATCCATTGGCTTATACTGGAACGGATGACTACCAAGAATTCCATCGTTGTCAGCATTGCAAAGTGAAGTTCAAATCTTCATTAACGTTGGCTGCCCATCTGAAAAGAAAGCACAAACAGAAAGCTTATTTCTGTCTCGTTTGTATGAAAACTTTTAATACTTCTTTGGAAGCCAAGATACATCGGCAGACTTCTGAACACAGGATTAAAAGCAGAGAAAACCGCATCAGGCTAAAAGGAGGATCCACAAAGGACTTGAACAAGAAATGCCCTTACTGTACTGAGAAAGTCGTTTTGAGAAACATCTTGATGTTAAAGGAACATATTCGCATAGTACATCCCGATATAAGAAAAAAATGCCCCAAATGCGGAATGACCTTCATATTCTCCCAAGAAGTGACCAGGCATATCAGATCCGAAGCTTGTAAATTCCAGCCTTCCGCTTCCAACGCTTCCATTTTTTGGAACTGCAGCAAATGTCTCTTTACGACAGACTCGCAAGCAGAATGCTTCTTTCACGAAGTTCTACACACCGAGCCGGTTAAAGAAACAAAAATAATTAAAGGAGTTGAAAAGATCTTCCAAAAATATACGTGCCCGCTTTGCCCTAAGAGCTTTAAAAAGGCGTCCCTGCGTCAGCACTTGCGGCAGCATACCTTTGAAAGACCATTTGTTTGCGGGACGTGCGGAGCGAACTTCACCAGGCAGACGACTTTGGTAAACCATCAAAAAAACGAGCACGGCACCACCGGCAAGATGCCCAGAGTGCCGATAGTTGAAAGAATCGAGGATCCGGATATTGATTGGGAATGCGAGAAATGTGGAAACAATTTTAATAGTAGATCTGCTTTAACCCGTCACGTAGCTGTGGACTGTACTGAGCTTTCGAGGTCCGGTGCTATGCTGCAATGTCCACATGAAGAATGTACTTATGTGGCAAACACTATTAGTAAATTAGCCAGACACCGACGAACACATGGCGAACGAATAAAACACCACGAATGTCCCTTATGTTCTTTCAAGACGGACCAAGCTAGTCATTTCAAAAGGCACATGCTTTGTCACAGAGGAATCAAACCCTATGGCTGTCCATATTGCCAGTTTACATGTGGAAGTTTGGAAAATCTACGAAAACATGTCCTTCGAAGCGGCCGTCATAAAGGTCTTTGTTTGTATAAGTGTCATATATGCAATTATCCTACTAATATGGCAACTAATCTCCGAGAACATTTGAGAACAGTACATAGTGATAAGTATGACTCTAAAACCGCTACTGAAAGTGTAAGAACACATTTAATGGTGAACAAGTCAATCGAATGA
- Protein Sequence
- MLSLRDDDDDKHLCIKCNATIVGLDSYIKHRKDKCGKAKVNKRPDLPPIDTLDPSCSLGADIFFQSLELQSSVKKTSLTPPVPTTKPSDSKNAPSTSSQRVSPLDSRGEHWIGGHSLTTDTSVDNHTKLINAVASISGSVKKDVSFDLYDESDDSEGSEDDDDDEHASGQKWKPPPNYTGGKWRPTSPDQAWNPNDGEQTGKWKSDLPDRDEDDETPPPGHTKGKWVPGANEKTQIMQPIIQSKGSIQYWCGPCNRRLGSRAVYDKHLKSSLHIKKVLPERELEYSGHLKPIKPKRTIRPSRFVNDGIYTRTQRKKTKSTKVSVKIQLKKRKRKTTFIRCIGCDSRVRRHLMGKHLISHYHFRKTTAVDSEVYQKLILDNIVAIVHQSPFQCNPCKFYTNWLSNFMQHWFTEEHQEKTNLIEGRFWCSFCKFECETSQEMLDHLSSPTHSEAVAVVNRSMPIIIRKKTIFKCETCSMEFKYNIEMKKHSIKTSHPLAYTGTDDYQEFHRCQHCKVKFKSSLTLAAHLKRKHKQKAYFCLVCMKTFNTSLEAKIHRQTSEHRIKSRENRIRLKGGSTKDLNKKCPYCTEKVVLRNILMLKEHIRIVHPDIRKKCPKCGMTFIFSQEVTRHIRSEACKFQPSASNASIFWNCSKCLFTTDSQAECFFHEVLHTEPVKETKIIKGVEKIFQKYTCPLCPKSFKKASLRQHLRQHTFERPFVCGTCGANFTRQTTLVNHQKNEHGTTGKMPRVPIVERIEDPDIDWECEKCGNNFNSRSALTRHVAVDCTELSRSGAMLQCPHEECTYVANTISKLARHRRTHGERIKHHECPLCSFKTDQASHFKRHMLCHRGIKPYGCPYCQFTCGSLENLRKHVLRSGRHKGLCLYKCHICNYPTNMATNLREHLRTVHSDKYDSKTATESVRTHLMVNKSIE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00236217;
- 90% Identity
- iTF_00236217;
- 80% Identity
- -