Bmor013714.1
Basic Information
- Insect
- Bombyx mori
- Gene Symbol
- -
- Assembly
- GCA_027497135.1
- Location
- CP114963.1:6595358-6598685[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00025 0.014 15.8 2.0 1 23 327 349 327 349 0.97 2 11 0.012 0.68 10.5 1.7 2 23 443 465 442 465 0.95 3 11 0.013 0.73 10.4 0.3 1 23 469 491 469 491 0.98 4 11 2.1 1.1e+02 3.5 1.8 2 23 513 535 512 535 0.88 5 11 0.58 32 5.3 0.2 1 23 539 562 539 562 0.96 6 11 0.016 0.92 10.1 0.2 2 23 585 607 584 607 0.92 7 11 0.00014 0.0078 16.6 3.1 2 23 618 639 617 640 0.95 8 11 0.0013 0.07 13.6 1.2 2 23 655 676 654 676 0.96 9 11 0.0085 0.47 11.0 0.8 1 23 682 704 682 704 0.96 10 11 0.32 18 6.1 3.0 1 23 710 734 710 734 0.92 11 11 0.046 2.5 8.7 0.3 3 23 788 808 787 808 0.98
Sequence Information
- Coding Sequence
- ATGAACGAAATATCAACTGACGATACTGAGAGCAATGATGTAGATGACGAAATAGTCACTGACGGTCCAGAAACGGATCAAATCGTTAATCGAACGACAGAAGACGTTACACCAATAAACACCTACACGCGGCACGAAGAGCTAAACCAAAAACTCAGCATCAAAGTCGAAGGCGGTCAAAGTGAGATGAGCGTGAACGCTGGCACTAGAGCTGATGAAGCTGATCTGCGTGAAGCCAACGTCGACAATGTCAGTAATGCCGACGCCACAGACGCCGGAATAAATGTGAAGACAGAACATTTCACATACGGCGATTTCAATAAGGACTGCCCAAAGAGCCAACTAGTTATAAAACAAGAATATGACGATATATATTCCGAGGGTGTTTCTCAAAGCAGTGATTGCTCTATAAAGATTTTGTCGGTTGGTACTTTGAAAGATGAACTAAAGCGCCAAGAGTGCGGGATTCCAGATTACAGTGACGCAGTCAAACTGGAGGCTACCGGAGATGACTTCACTTCGTTCGATTATCCTAATTACGATGACAGCATGGACAGCAATGAGGCTGCAGCTTTTTGTAGAGTCGAAACTTGTCTCCAAGAAGACGGACAAAGGATCGAACGTAATCAGATTTATGATGATAAACAAGACTTGTATAGAGTAATCAAGGAGGAGGAACACTTGACGGTGACCGACACACATATAATTTCCAACAAGCTCACCAACACGTCATTGTACGCAAACCCCTATGATGTGCTGATAAAAAGTAAAAAAGGATTAGTCATGGAAATACGACCTATGTCCGGGCGAAATTTCGGTATGAAATCCGGCAACCCAGAAGAGATATTGCCAACAATCGACAATTACGACGATTACGAAGCTTTCCAATTGAATTCGATCACCGGAGACGTTGCGTCTCTCGAGCAAGAAGCCTACGGTCTCCTGAAAGCTAAAACGAAGACGACACGCAGAAAAAAGCACGTTTGTCCGAAGTGCGGTAATGCATACGCATCAGAAACATGCCTGAAGAGGCACCTCAAAGTCCACGACACTATTGAGAAGCAAACGAAAACTTCGGTGAAGAGACAAAAGGCTAAAATCGATAATCAGAGTAAAAAAGTCGATTCACTGAAATCGAGCATCGGCAAGAAGAAGAAAAACGCTGTCATTGAAACTAAAGTGGAAAAAATCGACATAGAACCAATCGCGGAGAAGAAGACGGACAAAGAAGGCTACGTGTGCATCTGCGGCGACGTTTTCCGGCGCAGGATTCGTATGGAGACCTGCATGAGGTCGCACAACACGGACCCCGACGTGAGTCACGTCAAGTGCACGACTTGCTCGAAGAACTTCAACAGCAAAGAGGAGTTGGCCTTCCACAGGAAACGAGTCCACAGGAAGCGGTTTCCTTGCAAGTTCTGCCCCACGGACTACGACACCGGGAAAGACCTATTCGAACACCTGAAAATCCACCGGCAAGTTCAACTGACCGAGTTCAAGGTTATATCGGAGATGGTCAACGGTAAGGAGATATTAAAGTGTTTTATGTGCAATAACTCTTTTAAGGAGCTACCTCAGCTGAAGTGTCACGTGATGGAAGATCACGTAGAGCCCTACTCGTGTAGGTACTGCAGAGCGGCGATCCCTAATATTATCGACTTCGCGAAACACATTAAATCGTTTCATCCCGAAGTTGAAGGTCAGTCACTCCTGGACGTTCTCGAGGCCTTCTCCAAATTGGTGCAAGCTTGGAAATGTGAGGAATGCGGCATGCAGTTCCACGAAGCAGATAAACTGGCTCTGCATCAGGCGGAGACTCACAACCCAGACTTAAGAGAGCAACTTCAGATACAATGTGAAGATTGCCGGAGAGTGTTTGTCAGTCACAAGGGCCTACAGTCTCACAGGAGAGTGCATCACAGCGTCGAAGTCGAGTCCGCGCCGCCTGAGGAGGCCGGGGTCATGTGTGTGGAGTGCCGCAAGATGTGCAAGGACATGGAGGCGCTGACGTCCCACATGAGGCTGCATTCGCCCGAGAGGAAATTTCCCTGCAAGTTCTGTGATTTCCGCTTCGCCACCGCGGAAAAGAGGAGAGTCCACCAGGAGCTACACACTGGCGACATGAAGTACGTCTGCTTTATATGCGAGTACCAGTGCACGTCGGAGAACCGGTTGAAACTGCACAAACGATCAGCCAAACACCAGAGCATGAAGGAGTACCTGCTGTCTGGGGCCTCGCTGACCGAGGAGAAGCCCGCAGCGAGCGAAGAAAGGAAAAACAAGAAAGAGACAAGATTCAAAAAGAGGAAGAAAGAAAGAGATAGAAGCGCGGGCAGTGGGTCCTCCGGGAGCTCCGTGCTGTGCGATGTGTGTGGTGACAAGTTTCCCAGCAAGAGCCTGATGCTGGAACACAAACAGTCGCATCCCTTCATAGAGTTCCCCAACGAAGACAAACCCACTAGGATATTCTTCAAATATCATTAA
- Protein Sequence
- MNEISTDDTESNDVDDEIVTDGPETDQIVNRTTEDVTPINTYTRHEELNQKLSIKVEGGQSEMSVNAGTRADEADLREANVDNVSNADATDAGINVKTEHFTYGDFNKDCPKSQLVIKQEYDDIYSEGVSQSSDCSIKILSVGTLKDELKRQECGIPDYSDAVKLEATGDDFTSFDYPNYDDSMDSNEAAAFCRVETCLQEDGQRIERNQIYDDKQDLYRVIKEEEHLTVTDTHIISNKLTNTSLYANPYDVLIKSKKGLVMEIRPMSGRNFGMKSGNPEEILPTIDNYDDYEAFQLNSITGDVASLEQEAYGLLKAKTKTTRRKKHVCPKCGNAYASETCLKRHLKVHDTIEKQTKTSVKRQKAKIDNQSKKVDSLKSSIGKKKKNAVIETKVEKIDIEPIAEKKTDKEGYVCICGDVFRRRIRMETCMRSHNTDPDVSHVKCTTCSKNFNSKEELAFHRKRVHRKRFPCKFCPTDYDTGKDLFEHLKIHRQVQLTEFKVISEMVNGKEILKCFMCNNSFKELPQLKCHVMEDHVEPYSCRYCRAAIPNIIDFAKHIKSFHPEVEGQSLLDVLEAFSKLVQAWKCEECGMQFHEADKLALHQAETHNPDLREQLQIQCEDCRRVFVSHKGLQSHRRVHHSVEVESAPPEEAGVMCVECRKMCKDMEALTSHMRLHSPERKFPCKFCDFRFATAEKRRVHQELHTGDMKYVCFICEYQCTSENRLKLHKRSAKHQSMKEYLLSGASLTEEKPAASEERKNKKETRFKKRKKERDRSAGSGSSGSSVLCDVCGDKFPSKSLMLEHKQSHPFIEFPNEDKPTRIFFKYH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -