Basic Information

Insect: Bombyx mori
Gene Symbol: -
Assembly: GCA_027497135.1
Location: CP114963.1:796789-802292[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 5.3 3e+02 2.2 0.4 1 23 215 237 215 237 0.95

2 12 0.003 0.17 12.4 4.7 1 23 243 265 243 265 0.98

3 12 0.4 23 5.7 1.3 1 23 277 299 277 299 0.96

4 12 0.0003 0.017 15.6 1.3 1 23 523 545 523 545 0.98

5 12 0.013 0.72 10.5 0.2 2 23 551 573 550 573 0.95

6 12 0.33 18 6.0 1.7 2 23 582 602 581 602 0.96

7 12 0.00011 0.0064 16.9 0.9 3 23 607 627 605 627 0.96

8 12 0.0052 0.29 11.7 1.1 2 23 641 663 640 663 0.96

9 12 0.0041 0.23 12.0 2.8 1 23 669 691 669 691 0.97

10 12 8.6e-05 0.0048 17.3 0.8 2 23 698 719 698 719 0.98

11 12 0.028 1.6 9.4 4.5 1 23 725 748 725 748 0.97

12 12 0.0016 0.091 13.3 3.3 1 23 752 775 752 775 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	5.3	3e+02	2.2	0.4	1	23	215	237	215	237	0.95
2	12	0.003	0.17	12.4	4.7	1	23	243	265	243	265	0.98
3	12	0.4	23	5.7	1.3	1	23	277	299	277	299	0.96
4	12	0.0003	0.017	15.6	1.3	1	23	523	545	523	545	0.98
5	12	0.013	0.72	10.5	0.2	2	23	551	573	550	573	0.95
6	12	0.33	18	6.0	1.7	2	23	582	602	581	602	0.96
7	12	0.00011	0.0064	16.9	0.9	3	23	607	627	605	627	0.96
8	12	0.0052	0.29	11.7	1.1	2	23	641	663	640	663	0.96
9	12	0.0041	0.23	12.0	2.8	1	23	669	691	669	691	0.97
10	12	8.6e-05	0.0048	17.3	0.8	2	23	698	719	698	719	0.98
11	12	0.028	1.6	9.4	4.5	1	23	725	748	725	748	0.97
12	12	0.0016	0.091	13.3	3.3	1	23	752	775	752	775	0.97

Sequence Information

Coding Sequence: ATGGATTATGATTCAATACCGGAGTTTCCTGCATTCAACAGCAATAAATTAGTCAAAACATACCCTAAAGCTAAAAAGTCACGAATTGTAAAACAGGAAGTTGAGAAACCACAAATACCCATAAGAATTGAAGTGAAAAAAGAGGCTTTGACTTCAAAAAATGCCTTAATTTTTATGCTCGAAGGATGTCTAAGATTGAAAGTATGCCGATATTGCCTTCACGAAACGCCTCTGCTGTCAGAACTGGAGCAAATCTTACAGATAGCCACTCCGAGAGGCATATACAAAATCTCCATTAAGGAAATTATTGCTAGTTTTTATCCCGTCAAGATATCAGAAGACAAGAACTTCCCAGATAAGATCTGCAACAAATGTCTGTCTAGTGCTCTTAGCTCATACCTGTTTGCGCAGCAATGTGAACAAGCAGAGAGAGCATTACGTAACTGTTTTGAAGATATTTATGAGAAATTTGAAAAGATAGATCCATTGGAACGCCCTAAGAAACGGGGCCGACAAAAATTGAATCCCAATTACAATAAAATATATGTCGAACATAAAAATGTTATGGATTACGCTGAACCAATTATCAATCTTAAAAACACATCGACAGAATCACTAACAAAAGATGAGAAACTACAAGATTATGAATGTTTGAAATGTTGTGAAGTGCTACCAAATGTTGAATCGTTGTTGAACCATGAAAAATTACATCCCAAAAGTATGTGGTACCACTGTAGGATATGCGGTAAAGCTTATCCAAAACGTCATCAAGTCAAAAAGCATTTTATAACTCACGCAAGAGAAGAAGTTGAAATTCCAGATCACAGTTTTTCATGTAAAATATGTAATTATAACACAAAAGAATATAATGTTTATCTACAACACATAGAGAAGCACAAATTTCAAGAATTACTACAAGATTTGATCGATCGTAAAACCGACAAGTTCTGCTCTATTTGCCTAAAGAAAAAAGACAGGCTGTTTGATATGGAGAGCATGCTATGCTTGCACGGAGGCTGTCCCGAGTTATCTGGTGATAGGAGTTTGTACAAAATTGTCAGTTCCATGTTGCCGGAGATTAACGCGAGTCGTAACATGGGAACAAAAATATGCGAAAAATGCCTTGACCATGCCATCATAGCATACGTATTCGTGAATCAGTTTTATTTTACCAGAAATAGGCTCGAGATTTGCATAAACTCATTAACAAACGGTCTGAACGTGGTAGACGCTTCAAAGGGAAATGTTTTCGCTGAAATTTCACTGTCAACAATAATGCCGATACAGAACAGTCTAAGCTTATTTTCAACTCAGGATGAGCCATCTGATGAAAAGGAATTGAAAGTGGACGTTCTTGAAGATGAATTCAGACAGCAGGATGAAACTGGTGATGACAAAACGGACTCGGAAGACGAGCGAGATAATTGCCGCGAAGACATCGAAGCGCCTCTTCCGAAACACGATCTGGTGAACGGCTACGAAGACCTGGACCCTATGAGCAGAGTCAGCGAGTTCCTAACGTTCAAAAAGCCGGTGTTGCGCAAGCCCAAACCCGCGGCCGAAAACTACACGTGTCCGCTATGCTACAAGAATTTTATATCGGATTACTTCTTGAAGAGGCACATCGTGAGGCACGCCAACAGAAACGTTCAGTGTGGCGCCTGTCTCCAAGTCTTCAAAACGAAATTCAACTTTATCGAGCACGTGAAGAGCGCGCATCGGACTAACGTTAAGCCGTTGATTAAATGCGAGATATGTGAAAGGCACGTTAGCTTGAAGAAGTTGAAGTCACACACCAGGGCGCACTCCGAAACTAACTGCGTGCTCTGCGGGAAGGTCTTCGTATCGGTCAAGCATTACAGAGCCCACATGGAGAGGCACGCGCTAAAGTTGCGCCTCATCAGACGCCGGTATGTAAAGACGTGCGGTTTCTGCGAGAAGGAATGCGCAAACAAGAATGCGCTCACGGCTCACGTCAATAAAGTTCATTTACAAGTAAAGCCATACGCTTGCGACATGTGCGAAAAGCAGTTTTACACCGAATACGATTTGAGGTGCCACATGAAACTGCATAGTTCGAAATCTAAGGAGCGCTGTGAACTTTGTTTTAAAGTGTTAAGGTCCAGGAGTCAGCTCGTAGCGCACATTAGAAAGCATATGGGGGTCAGGCCTTACGCTTGTCAATTGTGCAATCACACGTTTTATTCTCAGAACAAGACTTACGTGCACATGAGGAGACGCCACGGAGGAATCCACGTTTGTAAGTTTTGTAAAACGGCGTATTCGACTCAAAGGAAACTAGAGATTCATACGCAGACATCTCATTCTGTGATTTAA
Protein Sequence: MDYDSIPEFPAFNSNKLVKTYPKAKKSRIVKQEVEKPQIPIRIEVKKEALTSKNALIFMLEGCLRLKVCRYCLHETPLLSELEQILQIATPRGIYKISIKEIIASFYPVKISEDKNFPDKICNKCLSSALSSYLFAQQCEQAERALRNCFEDIYEKFEKIDPLERPKKRGRQKLNPNYNKIYVEHKNVMDYAEPIINLKNTSTESLTKDEKLQDYECLKCCEVLPNVESLLNHEKLHPKSMWYHCRICGKAYPKRHQVKKHFITHAREEVEIPDHSFSCKICNYNTKEYNVYLQHIEKHKFQELLQDLIDRKTDKFCSICLKKKDRLFDMESMLCLHGGCPELSGDRSLYKIVSSMLPEINASRNMGTKICEKCLDHAIIAYVFVNQFYFTRNRLEICINSLTNGLNVVDASKGNVFAEISLSTIMPIQNSLSLFSTQDEPSDEKELKVDVLEDEFRQQDETGDDKTDSEDERDNCREDIEAPLPKHDLVNGYEDLDPMSRVSEFLTFKKPVLRKPKPAAENYTCPLCYKNFISDYFLKRHIVRHANRNVQCGACLQVFKTKFNFIEHVKSAHRTNVKPLIKCEICERHVSLKKLKSHTRAHSETNCVLCGKVFVSVKHYRAHMERHALKLRLIRRRYVKTCGFCEKECANKNALTAHVNKVHLQVKPYACDMCEKQFYTEYDLRCHMKLHSSKSKERCELCFKVLRSRSQLVAHIRKHMGVRPYACQLCNHTFYSQNKTYVHMRRRHGGIHVCKFCKTAYSTQRKLEIHTQTSHSVI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00236209;
90% Identity: iTF_00236209;
80% Identity: -