Basic Information

Insect: Bombyx mori
Gene Symbol: RREB1
Assembly: GCA_027497135.1
Location: CP114947.1:5735945-5741564[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.17 9.6 6.9 0.5 1 23 79 102 79 102 0.94

2 12 4.1 2.3e+02 2.6 0.1 1 22 140 161 140 161 0.84

3 12 0.02 1.1 9.9 0.1 1 23 288 310 288 310 0.97

4 12 0.0011 0.059 13.9 0.4 1 23 319 341 319 341 0.99

5 12 0.00065 0.036 14.5 2.0 1 23 347 370 347 370 0.97

6 12 0.0026 0.15 12.6 1.6 1 23 712 735 712 735 0.96

7 12 0.00022 0.012 16.0 1.3 2 23 927 948 926 948 0.97

8 12 0.023 1.3 9.7 5.3 1 23 954 977 954 977 0.97

9 12 0.21 12 6.6 1.1 1 23 1010 1034 1010 1034 0.90

10 12 0.042 2.3 8.8 0.1 1 23 1058 1081 1058 1081 0.91

11 12 0.0016 0.091 13.3 0.2 2 23 1121 1142 1120 1142 0.96

12 12 4.7 2.6e+02 2.4 7.5 1 23 1148 1170 1148 1170 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.17	9.6	6.9	0.5	1	23	79	102	79	102	0.94
2	12	4.1	2.3e+02	2.6	0.1	1	22	140	161	140	161	0.84
3	12	0.02	1.1	9.9	0.1	1	23	288	310	288	310	0.97
4	12	0.0011	0.059	13.9	0.4	1	23	319	341	319	341	0.99
5	12	0.00065	0.036	14.5	2.0	1	23	347	370	347	370	0.97
6	12	0.0026	0.15	12.6	1.6	1	23	712	735	712	735	0.96
7	12	0.00022	0.012	16.0	1.3	2	23	927	948	926	948	0.97
8	12	0.023	1.3	9.7	5.3	1	23	954	977	954	977	0.97
9	12	0.21	12	6.6	1.1	1	23	1010	1034	1010	1034	0.90
10	12	0.042	2.3	8.8	0.1	1	23	1058	1081	1058	1081	0.91
11	12	0.0016	0.091	13.3	0.2	2	23	1121	1142	1120	1142	0.96
12	12	4.7	2.6e+02	2.4	7.5	1	23	1148	1170	1148	1170	0.97

Sequence Information

Coding Sequence: ATGTATTCTTTTGTTACAGAAATCAAAACAGAGGACATCAGCGAGGCTAAAATCGAAGCCGACGAGGAAATGGATAAAGTGAAAATTGAACAACAGGAAATGAGGAATCGTACGACTAGTATTGACAGCGACAACCGTTCGGATAGGAGCGACGATGAGGACGTCAGAAGGGCGCGAAAGCGGGCCGCGTCCACTTCTCCTTCCCCCATCCCGATGGACAAGAGGGTCGCTCGCTTCGACTGCCCGAAGTGCCGCCAGCGTTTCGATTCGGTCAACGCTTTCGACATTCACCGGTTCACAGCGCACGGAGATGATTCGAGAACGGGCCACAACGAGGTCAGTCTCGTCGACTACTCGACAAAGAAGATTCCAGAAATTATACGTGCCAGGAACCACGTCTCATCGACCGAACAACGATACAAATGTGACGTGTGCTCGAGGGATCTCCCCAATATTCAAGTATTTGAGATTCACAGGAAAACATGCACACCGAATCGTGGCTTGAGTCCGATACGCGACAGACGAGAAGAATTCTTGGCTAATCTAGATCTGCGGACCAAATCGTTCGGGATTCCGGGCACGTTGACGCCGCCGATGGAGAGATTTACATCGAAGTTCGAAGACGGGCATCTCGCGACTAACGGTATTAGACATATCGATGCAGCTCGAGATTTGGCAGATATTCAATCGATATTGAACGTCACGTCTGCGGGGAGTCTTCTCGAGAGACTCACTGGTAACAGAGTAGCTTTAGAGAGCACTGTACTTACGCCTCCAGACACCGTCGTTAAAGAACGAGAGACTGAAGAGACACAGGATAACTTTGCCGCTGAATTCAGGAGGATGAAGCTTCGGGGAGAGTTCCCTTGTCGCTTGTGTCCAGCTAAATTTCCCAATCTTAGAGCTTTAAAGGGCCATAACAGAGTCCACTTAAGTGGAACAGGACCGGGCCCTTATCAGTGCAACATGTGTCCACACGCATCTTTAGATAAGGCGGCTCTAGTGAGACATATGAGGACACATAACGGTGATCGTCCATATGAGTGTGCGGTGTGTAATTACGCGTTCACTACGAAAGCAAACTGCGAGAGACATTTAAGAAACAGACACGCCAAAGTAACCCGTGAAGATGTAAAACGCTCCATCATTTACCATCCGTCCGAAGATCCGAATAACGACGAAGTCAACTCGAAGCTCGCACGCGATGAAGTCAAGAGATCTCTCGCGTTCCACACCCCAGATATGGATAGGCGAAATGAGAGCACCGGTCGCGTGACTCCGCTAACTCATTTTACGCCTAGTTTCATTGCCGAAAGACATCCGGTCACAACACTTACATCGAAAGCTTTACCGGAAGCGCCGCTTTTGCGCGAATCAGACCGTCCCACGCCAAGGATCAAAGTGAAAGGAATCGGTCAGTTAAATCAAATCCCTGAATTCAGATCACCAGAACAAAATTACAAAACCAATGACGCTCATTCCGAAACGTATGATGAAGAGGTCCCTGTTGACCTAAGCACGAGTGATAATAACAGTTGCGATGTCCTTGATCTTAGCAAAAAGAAACGCGATGCCGACGATGAACGCAAAACCCCTGTACGCCCTACATTCGAACCAGATCCTGCGTCCGTTGCTGCTTCGGCATTAGAAAAAACGAGACTACTCTTAGCCCAGCAAAGATTATTTGAAACGTCGCTCCCAAAAATTGACCCAGCTTACTATGCTACTCATCTATCTCAAATATACGCTGGTGCGGTGCCAGGAATTCCTGGGCTACCTCTGCCCCCGTCTTTTCCTTACTTTCTTCAACCCTCGTTTTTCCCCCACCCCTCTGACACACAAGAACTTGCAGAGATAAAGCAACGTATTCAAAAAGAAATCATCCGTGGGCTGAGTATGTCCGGTGGAAGGCTTATTCCAAATGAACAAGAAACTGTTCCTAAAGAAGAACCCGAGGAAGAAGAAGTGAAGCCAATTCCACAAATGTCATCGCCTGCGCTGTCGCCTCACCCAGAATCTCCCCGACCCCTGAGCAATAACCTCGTCCCTCAGACAGACTCCGTAAAGATGGTCATTAAAAATGGGGTGCTTATGCCAAAACAGAAACAAAGACGCTATCGTACAGAAAGACCATTTTCTTGCTCACAGTGCTCTGCTAGATTCACGTTGAGATCTAACATGGAAAGGCATGTAAAACAACAGCATCCCCAACACTGGAGTGTCCGTAGACCCGCTCAAAGAGGCCCCCCACCTTACACCTCTACGGACGCTTTGGCCGATCGCGTTAAATTCGCCCTTTTGGCTCATCACCTTGAACGACCACTGCAGTCAGAGAGATCGCCGGCGCGACGAGACTCTGATGAAGTCGCCGATAATGAAGAAGATGAGGACGACGCCCTAATAATTGACGAGGAAACGGATGTGGAAACCAAGTCCGAAGAACATACTGCAGCCCGACAAGCAGCTGCCGAAATACTGATGGCTTCGCGACAACAAGAGATCAATAAAGACTTTGATCTTAAAATAGCAGGCAATTTAATTAATAAACCAGTTCCCATAGCAGAGAAAACAGAATCTGGACCCGACCCTACACCAGGACAAGATTTGCTGACCGTTCCAGTTGTACCCACACGCAGTGACGAGGAAGAAGACGAAGAAGGCCTGGTAGCTTCAACAAGCGAGGGAAATAACTCGGGCAGCGAcgaaaataaATCTGAATCTGATGTCGCACAACCACCGAAAAAGAAATCGGCGTACAGTCTCGCACCGAATAGGGTCTCGTGCCCTTACTGCCATAGAAAGTTCCCGTGGTCTTCGTCCCTCCGCCGTCACGTCCTCACTCACACGGGCCAGAAGCCGTTCAAGTGTCCCCACTGCCCTCTACTTTTCACTACCAAATCGAATTGTGACCGTCATCTGCTAAGAAAACATGGGGGGTCAGCGCGTGCCATACTCGCCGAGCCCATACCGGACACCGTGATGGCTCCCCAGCCCGCGAATGAGAACAGGAGTGTTCCAGAGAGGCCTTTCAAATGTGCATCATGCCCAACCAGCACGTTCTCCTCTATAGAAACTTTAAAGAAGCACATGTCCTCTCGGCACGGGACCGACTCGCGGCCGAGCTCGCCAAACCTGGAGATTATTGACGACAACTCTGAGATGGGCCTCGCTTTCAAGTGTCATTTGTGCGAGGCGTCCTTCGGCGACAGAAGCGGGGCCCTCGCGCATTTGGCAGCCACACATGCGACTGAATACGAACAGCTGGTGAATAAGGGGGCGTTGGATGCGGCCAGCGACAGGAGTGAAAGCGCTGACGATGACGACAGGGGCAAGTTTCCCGATCACGCTAATCGAAAGGTGGTCTGCGCGTTTTGCGTCCGCCGGTTCTGGTCCGCTGAGGACCTGCGTCGCCACATGAGGACGCACTCCGGCGAGAGGCCGTTCGCTTGTGACCTCTGCTGCAGAAGGTTCACCCTGAAGCACAGCATGCTCCGTCACCGCAAGAAGCACAGGGAGGACCACACTGATGACGAAGAGACTTCGCCTCCGAACACCCCAATCGACAACGAAGCCAACGGGTATCTGTACCGGGAGGACGCCGGATCCGGACCGGAGACCCCGAGCAACGTGAACAACAACAACTCGCCGCCCTCCGGCCCCTACGAGAAGAAACTAAAACTCGACATGGTATCGAGGAAGTACTCATCGGAGGCCGAAATCGAAGGCGAAAACGGAAGCGACCTCATCGGGAAGCTACTGGGAATCCCCGACAAGACCATCAACAAACTGCTCTCATCGGCCGACGAGGCAGCAAAAATACTCGGAGTCAACAAATGA
Protein Sequence: MYSFVTEIKTEDISEAKIEADEEMDKVKIEQQEMRNRTTSIDSDNRSDRSDDEDVRRARKRAASTSPSPIPMDKRVARFDCPKCRQRFDSVNAFDIHRFTAHGDDSRTGHNEVSLVDYSTKKIPEIIRARNHVSSTEQRYKCDVCSRDLPNIQVFEIHRKTCTPNRGLSPIRDRREEFLANLDLRTKSFGIPGTLTPPMERFTSKFEDGHLATNGIRHIDAARDLADIQSILNVTSAGSLLERLTGNRVALESTVLTPPDTVVKERETEETQDNFAAEFRRMKLRGEFPCRLCPAKFPNLRALKGHNRVHLSGTGPGPYQCNMCPHASLDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHAKVTREDVKRSIIYHPSEDPNNDEVNSKLARDEVKRSLAFHTPDMDRRNESTGRVTPLTHFTPSFIAERHPVTTLTSKALPEAPLLRESDRPTPRIKVKGIGQLNQIPEFRSPEQNYKTNDAHSETYDEEVPVDLSTSDNNSCDVLDLSKKKRDADDERKTPVRPTFEPDPASVAASALEKTRLLLAQQRLFETSLPKIDPAYYATHLSQIYAGAVPGIPGLPLPPSFPYFLQPSFFPHPSDTQELAEIKQRIQKEIIRGLSMSGGRLIPNEQETVPKEEPEEEEVKPIPQMSSPALSPHPESPRPLSNNLVPQTDSVKMVIKNGVLMPKQKQRRYRTERPFSCSQCSARFTLRSNMERHVKQQHPQHWSVRRPAQRGPPPYTSTDALADRVKFALLAHHLERPLQSERSPARRDSDEVADNEEDEDDALIIDEETDVETKSEEHTAARQAAAEILMASRQQEINKDFDLKIAGNLINKPVPIAEKTESGPDPTPGQDLLTVPVVPTRSDEEEDEEGLVASTSEGNNSGSDENKSESDVAQPPKKKSAYSLAPNRVSCPYCHRKFPWSSSLRRHVLTHTGQKPFKCPHCPLLFTTKSNCDRHLLRKHGGSARAILAEPIPDTVMAPQPANENRSVPERPFKCASCPTSTFSSIETLKKHMSSRHGTDSRPSSPNLEIIDDNSEMGLAFKCHLCEASFGDRSGALAHLAATHATEYEQLVNKGALDAASDRSESADDDDRGKFPDHANRKVVCAFCVRRFWSAEDLRRHMRTHSGERPFACDLCCRRFTLKHSMLRHRKKHREDHTDDEETSPPNTPIDNEANGYLYREDAGSGPETPSNVNNNNSPPSGPYEKKLKLDMVSRKYSSEAEIEGENGSDLIGKLLGIPDKTINKLLSSADEAAKILGVNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01490512;
90% Identity: iTF_01490512;
80% Identity: -