Basic Information

Insect: Bombyx mori
Gene Symbol: -
Assembly: GCA_027497135.1
Location: CP114949.1:6237852-6266127[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0022 0.12 12.9 0.2 1 23 494 517 494 517 0.95

2 13 0.043 2.4 8.8 4.3 2 23 671 692 670 692 0.95

3 13 3.4 1.9e+02 2.8 0.5 1 23 703 727 703 727 0.86

4 13 0.00016 0.0089 16.5 1.0 2 23 734 757 733 757 0.96

5 13 0.037 2.1 9.0 0.2 1 23 763 785 763 785 0.93

6 13 0.0026 0.14 12.7 5.0 1 23 791 813 791 813 0.98

7 13 0.13 7.5 7.3 0.1 2 20 824 842 823 844 0.91

8 13 0.34 19 6.0 0.2 1 23 920 942 920 942 0.97

9 13 1.3 73 4.1 6.3 1 23 949 971 949 971 0.95

10 13 0.0012 0.069 13.7 1.8 1 23 1007 1030 1007 1030 0.95

11 13 0.0015 0.081 13.4 1.2 1 23 1036 1059 1036 1059 0.97

12 13 0.0055 0.31 11.6 0.5 2 23 1078 1100 1077 1100 0.96

13 13 5.8e-05 0.0032 17.8 0.6 2 23 1134 1156 1133 1156 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0022	0.12	12.9	0.2	1	23	494	517	494	517	0.95
2	13	0.043	2.4	8.8	4.3	2	23	671	692	670	692	0.95
3	13	3.4	1.9e+02	2.8	0.5	1	23	703	727	703	727	0.86
4	13	0.00016	0.0089	16.5	1.0	2	23	734	757	733	757	0.96
5	13	0.037	2.1	9.0	0.2	1	23	763	785	763	785	0.93
6	13	0.0026	0.14	12.7	5.0	1	23	791	813	791	813	0.98
7	13	0.13	7.5	7.3	0.1	2	20	824	842	823	844	0.91
8	13	0.34	19	6.0	0.2	1	23	920	942	920	942	0.97
9	13	1.3	73	4.1	6.3	1	23	949	971	949	971	0.95
10	13	0.0012	0.069	13.7	1.8	1	23	1007	1030	1007	1030	0.95
11	13	0.0015	0.081	13.4	1.2	1	23	1036	1059	1036	1059	0.97
12	13	0.0055	0.31	11.6	0.5	2	23	1078	1100	1077	1100	0.96
13	13	5.8e-05	0.0032	17.8	0.6	2	23	1134	1156	1133	1156	0.96

Sequence Information

Coding Sequence: ATGGCCAACGAGCTGCAACCATTGATGCTGTGCACAGAGAACTCTGCAGGTGAAGAGGTTACATTTAGGATTGAACCTGAAGACGACTTCCAATCCTTTCTGGATAAAGCCAAAGCTGTCCTCGGCTACGACATAGATATAAACTCCATAACACAGAATCAACCCGTTTCGCTGCACGATAGTATATATCAATTCCTTGCGAATGCGGAATGTAATCCGACACGTCCGACATACGATCAGGGCTTGAATAGTGCCGGCCTAGAGTATATTCTCGATGACGGTACAGAAATCAGAGCATCACAGATACATTTCGACAATGAGGATTCTGTGTTAGATTTATCAGTTGAAGCTCTTCCGTTTGTTCGCTTTAAAGATGACGAGGAAGACCGCAATGATGCTGTTTTCGGGGATACCGTTAAATATAATATTGTTGGGAGTCCAACATTAAGGCTGGATCAGAGCGCCAACCTCAAAGACTTTGCCAATTCGTTACCGTTCAGATTGGTTCGTGACAGCACTTTGAATTTGGAATCGCATTACCAGATTTATTCAGATGTGACCGCTATGCGCAACTTTTCTGGAGCAATCCCCAGCGATAGTTATATGAATACCGATAATAGCTTTAAAAGAAACGACAGTTATCGGCAAAAGTCCGATAATTTCGCGTACCGTGATGAGATACTCGATATATTTAAGAATTCACCAGTAACTTCGTTGCCCTGCGAAGGTTACAGCGAAAGGAAACACGTGAGGAAAACGGATCCATCTCGGATCCACAAAAGGAAATCTGTATACGAATTCGACGGGGTTTTAATCAATGAGAATGCCAGAGAAATGTGCACAATATGCGCTCGTAAAGTAAACAAGGACAAAGCTTATTTATTTGATAACGAGGACCAGAAAAAGCACAGGTTTTCGCCGTGCAAGAAATCGGAGACCCAACTAAAAATAATCTGTGAGCTTTGTCTTAACGAATATTTTAAAACGTGCCGGATGAAAGGCGCCAACCAATTCTTGAATGCCGACGAATATTTGATCATCAAAAACAATCAACAGTACATTTATAAGAAGATTAAAGAGTTTCGTTTTCTGATCAACAAAAAAGAATGCAAAAAACAGAATAGTAATACAGCTATTGATGAGTACGTTAAAGTGGAAATCGGTTCTGATGGCGAGATAATAACGAAACCTCTAGAGGGGGGACCTGATGAGGTGGCGATGATGAAAGGCGGTGATGCCAGTGAGTCCTCGAGCGAAGTAGAGATTATTGAACAGAATGAACCCGAAACTGAGATAGATTCGATTATAGAGAACTTGGAGAATGCTGATGATGATGTTAAGGCGTTTTTGGGGAAATACCAGATTGACGATGGGGTATCGGAGCTTAAGTGCAGGTTTTGCGACACCGCATTTCCTGGTATACCCGGCGTGATTGAGCACGGAGATGCTCATAAGCACGAGATGGACAGTGAAATGGTTTACCCGTGTCCGCTCTGCGATTACGGTTACACTCATTTCAAATGGCTGAAAGGGCACATAATGGCGGCACACCAACGAAGACCAGAAACTGGCGTCAAAATTGAGAATACCAACGATTTAAACGGATCAGAGAAAACGGAAAATAAATCGCCAGAAAAAAGCGTTTGCGAAACCACAAACACTGCGCACCAAGCCATGCAGCTGAAGACGGAAGTGAAACAGGAGTGTCTGAACAGCAGCGACGATGAGATCTGGATCGTGCAGACCAACGACGCCGAAGCCACCAGCCCGGTCAGGAAGCTGATAGACGCTGTGCAGGTCGTCGAAAATCGAGATGGCGTAACGAAAAGGAAGCCAAAATGCTACAATTGCAGCCAACTGTTTCCTACCATAGCAGCGTTGGCCTCACACTCGTGTCGCCGACGCATGCGCAAAAGGAAGACGAACTGTGACCAGGTATCAGCTCATAAGCAGATGCCAGCGAAGTTTCGTAAGAAGAAATCCAAACAAGCCGACTCGAGTCAGATACTGACTTGTCACAACTGTAACGAGACGTTTACGTCGAAAGTTCGCCTTAAGTTTCACATGCAGTTCCACGAAGCGACGTCCCTAATGCAAGACGGTAGGTACAAGTGTGGCGACTGCGCCGATGTTTCATTCGCCAACGAGACGGAACTGTTCGATCACGTTCACTTCCAGCACGACAAGCAGAAGAGATGGGAGTGCCCAGTCTCTGACTGCGGAAAGACTTTCCATTTGAGGGCGACGCTCACAAAGCATAGCCGCACACACACAGACACGCGACGTTACGTGTGCGGCACGTGCGGAAAGAAGTTTCTAGATAAACAAACTCTGGACGAGCACGGAGTGACGCATCTGCAGATAAAGCCGTTCCAATGTCACATATGCTTGAAGCATCTGACTAGGAGGTCCCGTCTCCGGATGCACATCAGGGCCCACGAAGCAGAGCTTCGCCCGAGGACCTTGCTGGTCTGCAGGATCTGTTTCAGAGCATTTAGGGACAACGAACAGACGGAGGAGCATTTGAGTTTGTATCCGGATTGCTTTGAATCACACGTTAGAGAGACGAATGAGGCTCAGATCCCAGTATTGTCGCCAATTAGTGAGATTGTCAGCGATGACCCAAAGGGAACAGGCCAATCCGCGTTCTCCCGTCCGATACCTAGACAAGTCGACGATGACGTATCGGAGCCGTTACTGTCTGGTTTGACGGAAAAGTCGCGATGCGTGATCCGCGTCGTCGAAGTTGAGAAGGCATTCAAATGTGAATTTTGCGAGGATGTATTTTATCTGGAAGAGGGCTTGAACACACACAGAGCTATCCACAAGGGTGTTAAAAATCCATTCGTGTGTCACATTTGCAAAGTGAGTTTCGCGACGTATTCAAGatgcaccacccacaaaacaacgcacggtTTCTACAAGCGCTCTTTGACTGAAGCGAAGAAGCAGGGTGCGGGGGTTGAGGCGACAGCCAACGGAGTCTTAGGCTACGGAGACTTTCCGGTTGTGAAGCATTTCCTTTGCGAAGATTGCGGTCGGTCCTACCTACATTGGACTTACTTACAAGTCCACAGACGCATGAAGCACGTCAACGATGGCTCCCACACTTGCAACCAGTGCGGTCTGACCTTTCCTAACAGCTGGAGCGTCATATACCATCGGAAGAAGGTTCACGACAAGATTGAAACTGTAATAGAAAAACAGGGACACAAGCAGATTTATCGGATTCAATGTCGGGACTGCGACGTGATATTGTCAAACAAAACCGCACTTTATAAACATAGGAAGAAAGAACATTGTTCTTTAAGTGACGATGGAGACGGCGAAGATGACCTCACTAGGCAGCTTGAACACACTGTCAACAGGGTCCAGTCGCAGCAAGATTTAAGGGTTTGGTCGTGCACCGCGTGCCCCAAGCGTTATAAAGTTAAATCTGAACTGAAAGCTCATTTGAGGACGAAACATCCGTCCTACATAGCCGTTATCGAGGGCGTGACTACTATAGTACCCAATACGTTACGGTCTTTGGCCTTATTGAACAGTGTACCTAAGGAAACGGTCACCATTTCACCGTCGGATAGCAATAACGATGAAGAATTAAAAAATATATTTATCAATAACAAAGCTCCGTCTATTTTGAGGAACGTACGCAGACCGACGATCTTACAGCGCACTGAAATATTGTGCAACTCGCAAGAATATACGAACTTAAATAATGAGGTTGGAAAGAATTTATAG
Protein Sequence: MANELQPLMLCTENSAGEEVTFRIEPEDDFQSFLDKAKAVLGYDIDINSITQNQPVSLHDSIYQFLANAECNPTRPTYDQGLNSAGLEYILDDGTEIRASQIHFDNEDSVLDLSVEALPFVRFKDDEEDRNDAVFGDTVKYNIVGSPTLRLDQSANLKDFANSLPFRLVRDSTLNLESHYQIYSDVTAMRNFSGAIPSDSYMNTDNSFKRNDSYRQKSDNFAYRDEILDIFKNSPVTSLPCEGYSERKHVRKTDPSRIHKRKSVYEFDGVLINENAREMCTICARKVNKDKAYLFDNEDQKKHRFSPCKKSETQLKIICELCLNEYFKTCRMKGANQFLNADEYLIIKNNQQYIYKKIKEFRFLINKKECKKQNSNTAIDEYVKVEIGSDGEIITKPLEGGPDEVAMMKGGDASESSSEVEIIEQNEPETEIDSIIENLENADDDVKAFLGKYQIDDGVSELKCRFCDTAFPGIPGVIEHGDAHKHEMDSEMVYPCPLCDYGYTHFKWLKGHIMAAHQRRPETGVKIENTNDLNGSEKTENKSPEKSVCETTNTAHQAMQLKTEVKQECLNSSDDEIWIVQTNDAEATSPVRKLIDAVQVVENRDGVTKRKPKCYNCSQLFPTIAALASHSCRRRMRKRKTNCDQVSAHKQMPAKFRKKKSKQADSSQILTCHNCNETFTSKVRLKFHMQFHEATSLMQDGRYKCGDCADVSFANETELFDHVHFQHDKQKRWECPVSDCGKTFHLRATLTKHSRTHTDTRRYVCGTCGKKFLDKQTLDEHGVTHLQIKPFQCHICLKHLTRRSRLRMHIRAHEAELRPRTLLVCRICFRAFRDNEQTEEHLSLYPDCFESHVRETNEAQIPVLSPISEIVSDDPKGTGQSAFSRPIPRQVDDDVSEPLLSGLTEKSRCVIRVVEVEKAFKCEFCEDVFYLEEGLNTHRAIHKGVKNPFVCHICKVSFATYSRCTTHKTTHGFYKRSLTEAKKQGAGVEATANGVLGYGDFPVVKHFLCEDCGRSYLHWTYLQVHRRMKHVNDGSHTCNQCGLTFPNSWSVIYHRKKVHDKIETVIEKQGHKQIYRIQCRDCDVILSNKTALYKHRKKEHCSLSDDGDGEDDLTRQLEHTVNRVQSQQDLRVWSCTACPKRYKVKSELKAHLRTKHPSYIAVIEGVTTIVPNTLRSLALLNSVPKETVTISPSDSNNDEELKNIFINNKAPSILRNVRRPTILQRTEILCNSQEYTNLNNEVGKNL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00236175;
90% Identity: iTF_00236175;
80% Identity: -