Bmor013939.2
Basic Information
- Insect
- Bombyx mori
- Gene Symbol
- -
- Assembly
- GCA_027497135.1
- Location
- CP114963.1:11585922-11595225[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.019 1.1 9.9 3.6 1 23 236 259 236 259 0.95 2 10 0.82 46 4.8 0.1 3 23 286 307 284 307 0.94 3 10 0.00012 0.0067 16.8 0.3 1 23 329 351 329 351 0.96 4 10 0.22 12 6.6 1.0 1 10 355 364 355 377 0.82 5 10 0.15 8.1 7.1 0.2 1 23 381 404 381 404 0.91 6 10 0.011 0.63 10.6 2.5 2 23 411 433 410 433 0.91 7 10 0.0025 0.14 12.7 1.3 1 23 440 463 440 463 0.93 8 10 0.00011 0.0062 17.0 2.7 1 23 469 491 469 491 0.98 9 10 1.7e-06 9.7e-05 22.6 2.7 1 23 497 519 497 519 0.98 10 10 4.9e-06 0.00028 21.2 0.6 1 23 525 547 525 548 0.96
Sequence Information
- Coding Sequence
- ATGATGGAGTTTGACGATATTGTGGTGAAGGAGAATCCCGGCCTTTGCCGGTGCTGTCTTTCTGAAGGGTGCTACAAAGATTTAGGTTCTGAGTACACTTGGATGAATGAAAATGAAGTTTACGCGGATATGCTGTTGGAATGCTTTGATATTAGTATATCACAAATAAATGAGGGACCGAACGGTCCGAATAGACTGATCTGCGAGGTTTGCATCACAAGACTCCGAGATGCATGTAACTTCAAGAAACAAGTGTTTGAATGCGAAAAAAAATTCATTGACATGGTTGCAAGAGGAGAATTTAGGAAAGTATTAATTTACCAAGCACACATGAAATCTGAAGAAGTTGGCCCCGAAGACGAAATACCAGCTGATGAATCTGAGTATCTAGAAGAGGATCCCGACTTCGGAGACGacgagccattgaaacgagaggaGCCTCAACCAACGGTATCTGCTGAGCCCTTACAGATCAAAGGGAAACGTGGCCGACCAAAGAAACAACCAGATGCCAAGCCTGAGAAAAAGAAATCAAATACGGACGACAAGAAAACTAAACCTGTAGCAAAAGATGGGAACCGAACAAAAGAGGCCGAGAATAAGTCCTCCCTGTCGGCCACCAAACGAAACAGACTGATGAAGAGAAACACTATAATTATTCTAGAGACCTCGACGGCCGTACCGTTCAAATGGCACAGGCAGAACTATCTGTGTTTCTTTTGTCATTTGACGTTCAAAGACTTCGGACCGCTGAGGCAGCATACCCGCAGCCAGCATAAGAACTCTAGCATTAAATCGGCTGTTTACTATGTGAGGAGAGACGAGAAAGTCAAAATGGACGTCACCGACATCGCTTGTCGTATTTGCGAAACGGCAATAACCGATTTTAATAGCTTCATTGACCATCTAAAATTGGTTCACGAGAAAAGGTTCTTTGAAGAATATGGTTACGGTTTGGTTCCGTATAGATTGAACGAGGATTCATTCGACTGTCCGATTTGCAATGAGCGTTTCGCTTACTTCATCAAACTAAACCAGCACATGAACGCGCATTACGGGAGCTACATTTGCGAATTGTGCGGCAAATCGTTTTTGAGCGAAGTAAGATTGAAATGCCACTCGTTACGTCACCGCTCCGGCTTCAAGTGTAACGTGTGTGCGGAAGTGTTCGATACCATGAACCAAAGGAACGGTCACGAGATGAAGATACACAAGATGGGCAAGAAATTGAAATGTTTGTATTGTAACGAGACCTTTGCGAATTACACGCAACGAAAGCGGCACCACAGCGCCGAGCACGACGTGAACAATCCGGAGTACTGCTGTCCGGTTTGCGGGAAAGCTTTCCACATTCTCAGCAAAATGAGGGTGCATCTCAGCGAAGTTCACGTCAGGGAGAAAAGGTTTACGTGTTCGGTTTGCGATCAGAGATTCTTCTCGTCCGCTCACGTACAGAAGCATATGGTCAAGCACTTTGGCGAGAAGGTGCATCAGTGTGAGGTCTGCAAAAAGTCATACGCGCGCAAGCAGACCCTAAGAGATCACATGCGAATACACAATAAAGACAGGAGATACCCTTGTGCTGTTTGCAGTCAAGCGTTTGTGCAGAACAACAGTTTGAGATCCCACATGAGGGTGCATCATCCGGATTTAATTGTGACGTGA
- Protein Sequence
- MMEFDDIVVKENPGLCRCCLSEGCYKDLGSEYTWMNENEVYADMLLECFDISISQINEGPNGPNRLICEVCITRLRDACNFKKQVFECEKKFIDMVARGEFRKVLIYQAHMKSEEVGPEDEIPADESEYLEEDPDFGDDEPLKREEPQPTVSAEPLQIKGKRGRPKKQPDAKPEKKKSNTDDKKTKPVAKDGNRTKEAENKSSLSATKRNRLMKRNTIIILETSTAVPFKWHRQNYLCFFCHLTFKDFGPLRQHTRSQHKNSSIKSAVYYVRRDEKVKMDVTDIACRICETAITDFNSFIDHLKLVHEKRFFEEYGYGLVPYRLNEDSFDCPICNERFAYFIKLNQHMNAHYGSYICELCGKSFLSEVRLKCHSLRHRSGFKCNVCAEVFDTMNQRNGHEMKIHKMGKKLKCLYCNETFANYTQRKRHHSAEHDVNNPEYCCPVCGKAFHILSKMRVHLSEVHVREKRFTCSVCDQRFFSSAHVQKHMVKHFGEKVHQCEVCKKSYARKQTLRDHMRIHNKDRRYPCAVCSQAFVQNNSLRSHMRVHHPDLIVT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -