Bmor000860.1
Basic Information
- Insect
- Bombyx mori
- Gene Symbol
- -
- Assembly
- GCA_027497135.1
- Location
- CP114965.1:7011441-7022432[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.023 1.3 9.6 9.3 1 23 237 259 237 259 0.99 2 9 1.6 89 3.9 0.7 2 23 281 301 280 304 0.91 3 9 9.8e-05 0.0054 17.1 0.3 1 23 309 331 309 331 0.97 4 9 0.039 2.2 9.0 1.1 1 23 349 372 349 372 0.94 5 9 0.0036 0.2 12.2 6.3 1 23 382 404 382 404 0.98 6 9 6.1e-05 0.0034 17.8 0.7 1 23 410 432 410 432 0.95 7 9 2.4e-06 0.00014 22.2 0.6 2 23 439 460 439 460 0.97 8 9 4e-07 2.2e-05 24.6 1.5 1 23 466 488 466 488 0.98 9 9 0.0056 0.31 11.6 0.0 1 21 494 514 494 515 0.95
Sequence Information
- Coding Sequence
- ATGGATACTATTTGCCGTTTGTGTTGTTCCGATAAATTCGTCAACAATTATATATTTGACGAAAAGAATGCATGGTACCTTAAAATGGCGTTATTACCCGTTAAGATTGACAAGAACGATCGGCTGCCCCAGAAGATTTGTGATCATTGCAGTCGTAAAGTTAACGAGTTTTATGAGTTTTGTAATGAAACTATTGTAGTGGAAAATAAGCTACAAGCTTTCTTAAAACAGCAAGGAACACACAACACAACTGTAGATCTCATACTTGGAAAACCGAAGACACCAATTCTACCTCCTAAAACATGTGAACAAAGCCATCGAATTGATGAAGGTATACCAGTAGATGAAGTTGTCAAAATTAAAGTTGAAACGCCAAAAGAAATAAAACAAGAAGATATTGAAGCAGAGGAGAACTATCACTACTCAGATGACAGTGATGATGTCTATTTAACAAATCTAAAAGCAAAGAAAAACGATATTGATGTAATAAGATTAAAAAACAGAGAGAAACAGGACGTAAAAAGTAATGGTGTGAAGAAAAATTCATGCGGAAACAAGTCTGAGCTTATGGAAGATTGGTCGATTTTACTAAAGCAGTTCCCTGAGGGCCCTTATAATTTGGTCGACGAAACAGATGTACCAGTTAAACAGGAAGTCAAAGATGAAAACAGTGCAGATTTCGATGACTTGCCTAACTTAAAAGACAAATATCGTTGTTGTATTTGTCTAAAGAATTGCAAGTTTAAGAGTACATTGTTGAAGCACTATAAAACACACGGAAAGGATATTCCAAAGACGAATAATCTTCAGGTGCCTCCAATACCTGATCAGAATCCATTAAAATGCACGAGATGTAGAAAGTCTGTAAAGAAAGATACGTGGGCGGAACATTGGCAGAACCATTGGAAACGCGACCACCGGCCCTACCGATGCGCGTTGTGCGACAAATCGTTCACGTCTTCACAACAAGTCATGGTGCACGGTCTGTCGCACAGCCACAATCCAGTCGACGACGAGGCCATGCAGCTGAAGAAGCAAAATCGTTATGTTTGTGATTTTTGTCCTGAAGAATTTATGTACATGAGATGTCTGCAGGCCCACCGGACGAACGCGCACCCTGAGTCCGCCTCGAAGGCCGTGACGCACCGCTGCTGGAAGTGCTCGCGGCAGTTCGCGCACCTCAATTCCCTGCGGCGGCACTTTATGACGCACACCGGCGAGAGGAACTTCCTGTGCAACGTGTGCGGGAAGGCAATGAGCTCGAGGGACCATCTCAAGCTACACATAAATATACACACCGGCTACAAGCCAAACGTTTGTTCgacatgcggtaagggtttcGTCAAGAAGAGCAACCTGAAGCTGCACGAGCGCGTCCACAGCGGCGAGAAGCCGTACGTGTGCTCGCACTGCGGGAAGGCGTTCAGCCAGCGATCGACGCTCGTCATACACGAGAGATACCACAACGGTGTGCGGCCGTACGTGTGCGCGCTGTGCGGTCGCGGATTCGTCGCCAAGGGGCTGCTGTCCGTGCACCTCAAGAACACTTGCATATAG
- Protein Sequence
- MDTICRLCCSDKFVNNYIFDEKNAWYLKMALLPVKIDKNDRLPQKICDHCSRKVNEFYEFCNETIVVENKLQAFLKQQGTHNTTVDLILGKPKTPILPPKTCEQSHRIDEGIPVDEVVKIKVETPKEIKQEDIEAEENYHYSDDSDDVYLTNLKAKKNDIDVIRLKNREKQDVKSNGVKKNSCGNKSELMEDWSILLKQFPEGPYNLVDETDVPVKQEVKDENSADFDDLPNLKDKYRCCICLKNCKFKSTLLKHYKTHGKDIPKTNNLQVPPIPDQNPLKCTRCRKSVKKDTWAEHWQNHWKRDHRPYRCALCDKSFTSSQQVMVHGLSHSHNPVDDEAMQLKKQNRYVCDFCPEEFMYMRCLQAHRTNAHPESASKAVTHRCWKCSRQFAHLNSLRRHFMTHTGERNFLCNVCGKAMSSRDHLKLHINIHTGYKPNVCSTCGKGFVKKSNLKLHERVHSGEKPYVCSHCGKAFSQRSTLVIHERYHNGVRPYVCALCGRGFVAKGLLSVHLKNTCI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00236148;
- 90% Identity
- iTF_00236148;
- 80% Identity
- -