Bmor013912.1
Basic Information
- Insect
- Bombyx mori
- Gene Symbol
- -
- Assembly
- GCA_027497135.1
- Location
- CP114963.1:11299857-11321761[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.033 1.8 9.2 2.2 1 23 390 413 390 413 0.92 2 10 4.8 2.7e+02 2.4 0.1 2 23 439 461 438 461 0.93 3 10 0.00035 0.019 15.4 0.6 2 23 484 505 483 505 0.96 4 10 0.00055 0.031 14.8 0.4 1 23 509 531 509 531 0.95 5 10 0.00046 0.026 15.0 0.2 1 23 538 561 538 561 0.94 6 10 0.0043 0.24 12.0 1.4 2 23 569 591 569 591 0.95 7 10 0.0068 0.38 11.3 1.0 1 23 598 621 598 621 0.97 8 10 0.0001 0.0057 17.1 2.1 1 23 627 649 627 649 0.98 9 10 4.5e-06 0.00025 21.3 3.1 1 23 655 677 655 677 0.98 10 10 0.038 2.1 9.0 0.4 1 19 683 701 683 701 0.98
Sequence Information
- Coding Sequence
- ATGAGACTTGGCTTCAAATGGGACATCTTACCTGACCGGCCACATTCCCCAGATATTGTGCAGTGCCCAAATAATGCTCTATTCAAGATCACATTGTCTGGTAGATTAGCATGGATCCAGTTAGACTCTGAGGACTACAATCAAATCTGTGATCCATGCATAAAGAGGCTAAGAGAGTCGTGCAGTTTTAGGAATTTAGTTATAAGATCCCAGAAGCAACTGATGGACGAAATAAGTAATGGCCATGAACCAGCAATAAAAATTGAGTATGTAAATGAAGCAGAGAAAGACTCATCAGAACCAGAACTCACGAGGGATAGTGTGTATGAAGAAGTGGAATTCTTAGATGTTCCTGTTGATGTCAAACCAAAAGAGAAAGTAGACAGAAAAATAATGACCACCGGTCCAACAAAGAGAAAACTTCCAAACAGGCAAGCGAAGAACATTGAAAATAGGTTAACGAAATATGCCATAGGAGACCCAGAGAAGACGATGGTTGTATCGAGAAGCAAAAAAATCTTACGTATAGATACTACAAATCACAATGGGATTTCAAACAAAATCTTAAACGAGAAATTGGATGAAGTTTCAGATAAACAGACTTTGGTGCCAAAAATAGAATTCTTAGAAGTGGAAAGCCAAGAAATCGTTGAAGAAATTAACAAGAATGAAGAAATTGGACTCGAGAAGAAAACATATGATGAAGTGGAGTATTTAGAGGAAGATGTCACAAATAACAGTCAACCAGAGAAAGATCCGATAACAGTCTGCTTAACCCGGCCCAAGAAACTGCCCCGGGCCAAACCCATCAAGAAATACCTTCAATACACCGAGGAGGACCTGAGGAATGGCGTGGAAGCAGTCAGAAACAACAGGATGTCTAGATTAGAAGCGGCCGAGTTCTATAACGTTCCGAGGAAGACTTTAGTTGCCAAACTCAAAATGGACGAGGAGAATGTCCGGGAAGTGGCAACCGTCGACGCCGGTACTAAGATCGGTAAAGGTGAGACGGACGTACGGGCGCGGTACAAAGCGATCGTTCGATGTAAAACACGTAGCGCGCCCGAGAACACATCCGCTCTAGAGATGACAAAGCACAAGGACAACATAAGAATGGTCATGCAACACTCGAATGCGACTCTGATCAGAGACCACCGCGGCGCCGGGTATTCTTGCTGCTTCTGCACGGAACGTTTCCAGACTCCGGCGCTGCTGAAACAGCACAATCTCAATATACACGAAGATGCCGGCCAAAACGCGATCAGGGTTAAATACGTGTCCGATCTCATACTTAAACTGGATGTAACGGGACTCCGGTGCTTAATTTGCGCGGCCAAGATCGAAACCCTTGAAGCGTTCTTGGAACATCTGAGGAAGGACCACAAGAAAACCTTCCACGCTGACGTCAAGTCTCACATGGTTCCGTTCAAATTCGAAGGAGAGGTATTAGAATGTGCGATCTGTAAGAAGCGATTTAAATATTTCAAGCTGCTAGCGGAACATATGAACGATCACTACAGGAACTACGAATGCTCCGTATGCGGACGAGGATTTGTGAACAAGCAAGCTATGCAGCTACATTCATATCGGCACCAGAAAAACGTCGGCGAATTCAAGTGTCCAGATTGCCCGAAAGTATTTGACACGCGGCCTCGTCGAAGTGCTCACGTTAGGCTTGTCCACCGTCACGGCAGGAAGACGAGGCGATGTCATCTCTGCGAAGAGAAGTTCGTATCCGCCCAGCAGGTCCAGAATCATATGGTCAAAACCCACGGAGCCAAGCAGCAAGTGTTCAAGTGCGATGCTTGCGATCGGACGTACACCGTCGCCAGGTCTCTCGACGAGCACAAGAAGCGTTACCATCTGATGCTCCGACCGCACCAGTGTACCCTGTGCGAGATGAGTTTCTACTCCAAGATGGAGCTGAACTCGCACATGGTCACACATACAAAGACTAGGGAGTTTCAGTGCGAGTTGTGCGATAAACGTTTCGGTACTAAATGCTCTCTCAACCAGCACATGAGAGCGCATTACGGTATAAAGCGCTACAAGTGCGACCGTTGCGATGTCAAGTTCGCCGCCAAAAACAAACTAAGGGCTCACTGCTGGAAGAAACACGGCGAGAGTATCCAGTGA
- Protein Sequence
- MRLGFKWDILPDRPHSPDIVQCPNNALFKITLSGRLAWIQLDSEDYNQICDPCIKRLRESCSFRNLVIRSQKQLMDEISNGHEPAIKIEYVNEAEKDSSEPELTRDSVYEEVEFLDVPVDVKPKEKVDRKIMTTGPTKRKLPNRQAKNIENRLTKYAIGDPEKTMVVSRSKKILRIDTTNHNGISNKILNEKLDEVSDKQTLVPKIEFLEVESQEIVEEINKNEEIGLEKKTYDEVEYLEEDVTNNSQPEKDPITVCLTRPKKLPRAKPIKKYLQYTEEDLRNGVEAVRNNRMSRLEAAEFYNVPRKTLVAKLKMDEENVREVATVDAGTKIGKGETDVRARYKAIVRCKTRSAPENTSALEMTKHKDNIRMVMQHSNATLIRDHRGAGYSCCFCTERFQTPALLKQHNLNIHEDAGQNAIRVKYVSDLILKLDVTGLRCLICAAKIETLEAFLEHLRKDHKKTFHADVKSHMVPFKFEGEVLECAICKKRFKYFKLLAEHMNDHYRNYECSVCGRGFVNKQAMQLHSYRHQKNVGEFKCPDCPKVFDTRPRRSAHVRLVHRHGRKTRRCHLCEEKFVSAQQVQNHMVKTHGAKQQVFKCDACDRTYTVARSLDEHKKRYHLMLRPHQCTLCEMSFYSKMELNSHMVTHTKTREFQCELCDKRFGTKCSLNQHMRAHYGIKRYKCDRCDVKFAAKNKLRAHCWKKHGESIQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -