Bmor003535.1
Basic Information
- Insect
- Bombyx mori
- Gene Symbol
- -
- Assembly
- GCA_027497135.1
- Location
- CP114962.1:2064215-2079765[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0005 0.028 14.9 0.3 1 23 143 166 143 166 0.95 2 12 0.1 5.7 7.6 0.6 1 23 172 194 172 194 0.97 3 12 0.18 9.9 6.9 3.3 1 23 198 221 198 221 0.96 4 12 0.018 0.98 10.0 0.5 3 22 255 274 253 278 0.88 5 12 8.1e-05 0.0045 17.4 1.5 1 23 289 311 289 311 0.98 6 12 0.00041 0.023 15.2 1.4 3 22 323 342 322 346 0.92 7 12 0.0028 0.16 12.5 1.7 1 23 383 405 383 405 0.97 8 12 0.038 2.1 9.0 0.6 3 22 415 434 413 438 0.88 9 12 8.9e-05 0.0049 17.3 0.5 1 23 446 469 446 469 0.96 10 12 4.8e-05 0.0027 18.1 4.1 1 23 475 498 475 498 0.97 11 12 0.0029 0.16 12.5 3.5 3 23 507 528 505 528 0.90 12 12 0.0091 0.51 10.9 5.3 1 23 534 557 534 557 0.98
Sequence Information
- Coding Sequence
- ATGAAGTTTAATATTATGGATAATCCACAAAACATAGTATGTTGCGGCTGTCTAAGCATTGGAAGAAAAATGATTAAAATAGACTTGGAGCGAAAAGAGTGTTTTCATCAAATTTTAGGTGATTTACAAGACCTAAAATTGGTATCCCAATCGAAATTGAATACCCAAAACACTTTAATAATAAATTATGATCCGGAGACCTCTGAAGAATTAGATTGGCATATCGCGGCTAGCGAAGAAAAGGAGACACCCTCCGATCAGCAATGTTCAGAAACAGAAACAGTAGTGCAACCAAAAAAGAAGATAAAGAAAGCTTCGAAGAGCAAGAGACTGATGCATCTGTACAAAGAGATAGAGTTGACTGAGAGTGACATAGAGGCCGAGAGGGATACAGAAGCCTCAAGCGATAGTTTTGTCAATGCCTTATTTAAATGCGAGAAATGCGTCGAAGCGTTTCCCAACCAAGAGGATCTGAATGACCATAATCTAAAGAAACATAATAAGAGGTTACGTTTCAGCTGTCTGGTGTGCGAGTGCTATTTCGGAACCGCAGCGGCTCTTTCGTACCACGCGAACAAGCACAGGATCCGTTATCAGTGCAGGTCGTGCCGCACGAGGTTCGGGACCAAATCGAAGGTGCTATCACACCACGCCCGGGAACACAGCTCGAAACCGGATGACCACGGCGCTGATAGCGAAACTACCCCGAACGTAGTGGCAGGCTTAGTGAGTGAAGCGAAAAGAGCGAACGGTAAGCTGGTGTGCGTCCCGTGTAATAGAACGTTCTCATCCATAGCCACGTTCAAACAGCACATGAAAATGAGCATGAAACACGTCCCCGAAAACGATTTTAACGCGGGCCCTTACTCGTGTGAGATTTGCGAGAAGAAGTTCCGCTGGACCACGTCGCTCCGCAAGCACATGGAGACCCACCGCATCGAGAGGGGGCAGAAGAGGAAGCCGTACTGCGAGTCTTGCAGATTATCCTTCACGACGTCCGCGAACCTCAGGAAACACGTGAAGACCAGCTCGAGGCATCAGATTATATTGAAACTAAGGAAGTTGGACGTGCACGCGGAGGACTCTCCCGAGAACCAAGCTCGGCTCGAGGAGATTCGTTGCTCTGTGACCGAGTCGAAGCAGCAGCACTACTGTCCGGAGTGCGACAAGAAGTTCCTGTGGCGCGGCAACCTCCTGAGGCACCTGAAGAGTCACCAGGCAAGAGCGAACGGTAATCTGGTGTGCGTCCCGTGTAATAGAAAGTTCTCATCCATAGCCACGTTCAAACAGCACATGAAAATGAGCATGAAACACATCTCCGAAAACGATTTTAACTACATGTGCAGCGACTGCGGGAACAAATTCGTGAACAAAACCCGCCTCAAGGACCACATCAATTGGGAGCATCTCAAGAACTATATTCACAGATGCTCAGACTGCAAGAAGGTGTTCAAGACCCGCACGTCCCTGTACTTGCACCGGCAGATGGTCCACAAGGAGATGTCTGACAATCATCTGTGCGATCACTGCGGGAAACGGTTTCCGAGTCAGGCCAGGCTTCATTATCACATAACGGCTCTACACAACAAGGAGACTCCGTACAAATGCACCACGTGCTCGGCGAGATTCAGCTGGCACTCGTGTCTCACCCGACACGTTCGGACCATACACTCGAAGGAAAAGACAAGCGGACTTAACAAAAGATAA
- Protein Sequence
- MKFNIMDNPQNIVCCGCLSIGRKMIKIDLERKECFHQILGDLQDLKLVSQSKLNTQNTLIINYDPETSEELDWHIAASEEKETPSDQQCSETETVVQPKKKIKKASKSKRLMHLYKEIELTESDIEAERDTEASSDSFVNALFKCEKCVEAFPNQEDLNDHNLKKHNKRLRFSCLVCECYFGTAAALSYHANKHRIRYQCRSCRTRFGTKSKVLSHHAREHSSKPDDHGADSETTPNVVAGLVSEAKRANGKLVCVPCNRTFSSIATFKQHMKMSMKHVPENDFNAGPYSCEICEKKFRWTTSLRKHMETHRIERGQKRKPYCESCRLSFTTSANLRKHVKTSSRHQIILKLRKLDVHAEDSPENQARLEEIRCSVTESKQQHYCPECDKKFLWRGNLLRHLKSHQARANGNLVCVPCNRKFSSIATFKQHMKMSMKHISENDFNYMCSDCGNKFVNKTRLKDHINWEHLKNYIHRCSDCKKVFKTRTSLYLHRQMVHKEMSDNHLCDHCGKRFPSQARLHYHITALHNKETPYKCTTCSARFSWHSCLTRHVRTIHSKEKTSGLNKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00236138;
- 90% Identity
- iTF_00236138;
- 80% Identity
- -