Basic Information

Insect: Bombyx mori
Gene Symbol: -
Assembly: GCA_027497135.1
Location: CP114960.1:15188363-15202898[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0011 0.061 13.8 2.5 1 23 246 269 246 269 0.97

2 11 5.6e-06 0.00031 21.0 2.5 2 23 277 298 277 298 0.97

3 11 2.6 1.5e+02 3.2 0.8 1 23 302 324 302 324 0.96

4 11 8.3e-05 0.0046 17.4 2.2 1 23 329 352 329 352 0.97

5 11 0.14 7.7 7.2 0.5 3 23 359 380 359 380 0.95

6 11 3.4 1.9e+02 2.8 0.3 2 20 390 408 390 410 0.90

7 11 3.1e-05 0.0017 18.7 0.9 3 23 422 443 421 443 0.94

8 11 0.0005 0.028 14.9 1.0 1 23 452 475 452 475 0.96

9 11 0.0065 0.36 11.4 0.2 2 23 484 505 483 505 0.97

10 11 2.3e-06 0.00013 22.2 0.4 1 23 511 533 511 533 0.96

11 11 0.00072 0.04 14.4 0.3 1 22 539 560 539 560 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0011	0.061	13.8	2.5	1	23	246	269	246	269	0.97
2	11	5.6e-06	0.00031	21.0	2.5	2	23	277	298	277	298	0.97
3	11	2.6	1.5e+02	3.2	0.8	1	23	302	324	302	324	0.96
4	11	8.3e-05	0.0046	17.4	2.2	1	23	329	352	329	352	0.97
5	11	0.14	7.7	7.2	0.5	3	23	359	380	359	380	0.95
6	11	3.4	1.9e+02	2.8	0.3	2	20	390	408	390	410	0.90
7	11	3.1e-05	0.0017	18.7	0.9	3	23	422	443	421	443	0.94
8	11	0.0005	0.028	14.9	1.0	1	23	452	475	452	475	0.96
9	11	0.0065	0.36	11.4	0.2	2	23	484	505	483	505	0.97
10	11	2.3e-06	0.00013	22.2	0.4	1	23	511	533	511	533	0.96
11	11	0.00072	0.04	14.4	0.3	1	22	539	560	539	560	0.95

Sequence Information

Coding Sequence: ATGGAGAAATCTGAAAAGCTTTGCCGAGCGTGCCTTGGTGTAGAAAACCTAAAGAAAATTGAAAACTCGCAACTTGAAGAAACGTTCAGATTATTAAGTGGTGACCAAGTGTTCTCATCTAGGAAACCATATATCTTCTGCCATCTATGTCATGCACAGTTGTTAATATGTCATCGATTCAGAGAAAGATGCCAACACTCAAATGAGGTTCTGGAACAAACATTGAACAATGAAGTGCTTGATAGTGATGATATCTCAACACCTTCACATGTTAAAGCCACAGCAGAAAAAGTTGAATATAATGAAAGCAAAAATCCTATTTTAACTGAAGTCTACATTGAATATGAAAATAAAGAAAGAGATGATACAAACATTAAAGATGAAAACATTAAAGAACTAGTCAATGTTAATATAAAAAATGAATTAAATGACCATGATTGCAAAAATGTTTGTGAATCTAATGAGGGACTAGATGATTTGGATACAGAAATACACAAGAAAAATACCTTAACGAAAGAATTGGTGGAAAATGAAGAAAAAACATTGGTAACCGAATTAAATAATGAAATAAAAAAACGGACACGTAAAAAAAAATTTAAGCAGATAGGTAAATATTTTGAAACAAAACAGAACATGGCCAATTTTGAACATACATATGATTTGAATATAATAACTTTGAGTACCGAAGATCAATACAAAGAGATTTTGAAACGTAAAAATGGCTTTTCATATCCATTCAGATGCAGCCTATGCTACAAAAGTTATATGGACGATGATAACTTGAATAAACATTTTAAAAAGTTGCATGATCCTAGTCGAGGCGATGAGGTGTGTGATATATGTAAGACACGTTACAGAGACAAGAAAATGTTGAAAAGACACATGAAGACGCATCGCTTGAAGTTTGCCTGTAGACAGTGTAAACATGTCTCTATACTTAGCTCCCAAGCAGTAGAACATTACAACATGCACAGAGGCCAGGTGTACAAGTGTCAAAACTGTGATAAGACTTACGACAAACAAACCACATACTTAGCGCACATAAGGTACAGTCACCCGTCGAAGTGCATCTGGTGCGAGCTGTGTGGCGAGTCCTACGTCTCCGAGACCGGCCTCAAGTGTCACCAGAACTTGGTCCATAAGGAGTTGAAATACCCACCGAACGCTAAATGCGCAAATTGTGAAACACGATTTCTGAATAATGAAGCCTATCGGACGCACAGCATGTCGTGCAACAAGTCGGCGAGCATGCCGGGCGCTGCGTGCGCTCACTGCGGCCGCAGCTTCGACAGCAGGTCGTCGTTACGCGAACATCTGTTAGAAACTCACGGGAACAAAAAGAATGATAAACTTTACCCCTGTACCAAGTGCAAGAAGACGTTCGCGCGTGCGTCGCGGCGGGGGGCGCACTACCGGCGCGCGCACGCCGCCCAGCGCGCGCCCGCCGTCGTGTGCGAGCGCTGCGGGAAGGCGCTGCCGAACACGACCATACTGAGGTACCACATGCGCACGCACACGGGCGAGCGACCCTTCCAGTGTCCGGACTGCCCCAAGGGCTTCGTCAAGCAGTCCTCACTCAAGAGCCACTCGACGGTGCACACGAGCGAGCGATCGTTCGCCTGCGAGCTCTGCCCAAAGACCTTCAAGTGGCGGTCCGGTCTGCGCACCCATCAACAAACCGTACAAGAAAAAAACCAACCTCAAGTCGCAGTTCCAACGATTTTCTGA
Protein Sequence: MEKSEKLCRACLGVENLKKIENSQLEETFRLLSGDQVFSSRKPYIFCHLCHAQLLICHRFRERCQHSNEVLEQTLNNEVLDSDDISTPSHVKATAEKVEYNESKNPILTEVYIEYENKERDDTNIKDENIKELVNVNIKNELNDHDCKNVCESNEGLDDLDTEIHKKNTLTKELVENEEKTLVTELNNEIKKRTRKKKFKQIGKYFETKQNMANFEHTYDLNIITLSTEDQYKEILKRKNGFSYPFRCSLCYKSYMDDDNLNKHFKKLHDPSRGDEVCDICKTRYRDKKMLKRHMKTHRLKFACRQCKHVSILSSQAVEHYNMHRGQVYKCQNCDKTYDKQTTYLAHIRYSHPSKCIWCELCGESYVSETGLKCHQNLVHKELKYPPNAKCANCETRFLNNEAYRTHSMSCNKSASMPGAACAHCGRSFDSRSSLREHLLETHGNKKNDKLYPCTKCKKTFARASRRGAHYRRAHAAQRAPAVVCERCGKALPNTTILRYHMRTHTGERPFQCPDCPKGFVKQSSLKSHSTVHTSERSFACELCPKTFKWRSGLRTHQQTVQEKNQPQVAVPTIF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00236181;
90% Identity: iTF_00236181;
80% Identity: -