Basic Information

Insect: Bombyx mori
Gene Symbol: -
Assembly: GCA_027497135.1
Location: CP114962.1:3220881-3237189[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.55 30 5.3 0.2 1 23 234 256 234 256 0.97

2 11 0.0025 0.14 12.7 1.0 1 23 263 285 263 285 0.99

3 11 0.0009 0.05 14.1 3.5 1 23 289 312 289 312 0.98

4 11 0.087 4.8 7.8 5.7 1 23 319 341 319 341 0.99

5 11 0.00056 0.031 14.7 2.0 1 23 347 369 347 369 0.94

6 11 1.1e-05 0.00059 20.2 0.4 1 23 375 398 375 398 0.95

7 11 0.0015 0.085 13.4 1.2 1 21 403 423 403 428 0.93

8 11 3e-05 0.0017 18.8 0.0 1 23 436 459 436 459 0.94

9 11 0.0029 0.16 12.5 1.2 1 20 465 484 465 488 0.92

10 11 4.3e-07 2.4e-05 24.5 0.9 2 23 496 517 495 517 0.97

11 11 0.05 2.8 8.6 0.1 5 22 526 543 523 545 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.55	30	5.3	0.2	1	23	234	256	234	256	0.97
2	11	0.0025	0.14	12.7	1.0	1	23	263	285	263	285	0.99
3	11	0.0009	0.05	14.1	3.5	1	23	289	312	289	312	0.98
4	11	0.087	4.8	7.8	5.7	1	23	319	341	319	341	0.99
5	11	0.00056	0.031	14.7	2.0	1	23	347	369	347	369	0.94
6	11	1.1e-05	0.00059	20.2	0.4	1	23	375	398	375	398	0.95
7	11	0.0015	0.085	13.4	1.2	1	21	403	423	403	428	0.93
8	11	3e-05	0.0017	18.8	0.0	1	23	436	459	436	459	0.94
9	11	0.0029	0.16	12.5	1.2	1	20	465	484	465	488	0.92
10	11	4.3e-07	2.4e-05	24.5	0.9	2	23	496	517	495	517	0.97
11	11	0.05	2.8	8.6	0.1	5	22	526	543	523	545	0.87

Sequence Information

Coding Sequence: atgttaccgggtACCAGGTCAAAAAATAAAAACTTAAATGTTACTTTAACACATACATGTATTATTTTACAGATTTTACTTAATTACGTTAAAAGCATGAATGAAAGTGATACATTTAACAATATTAATTCCGAGTACAGATGTTGGACTTGCCTGGGAACCAATGACATGATACAACCAGCTTCAATTGAAGAGACGATTTGGTATCAAAACAACGTCAAGATATTACAAAGTAACGATGAGTTATACCTATGTAAATATTGCAAATGGAAAATAGACAAGCTATTGAGATTCATAAGACAATGCCATTTGGCTTCAGAAATGGTCTGGAGAGATTTGAAAAAGGAACGAATAAATTTTCCTTATTTAGCCACCAAACCGATAGAGCACCATGAACTAGGTTCAGATGACACAGAAGATGATAATTATGATATATTCCGTGATGAAGACGACTTGCCATTATTGATGATGAAGAGTGACGAACCAGAGATTGAGTTAGAACCGCATGGTATTAAAGAGGAAATAAAAAACGAAATCGAAGTGAACAGTGATCATGTTAGAAAAAACGATAAGGAAAAACGTTTCAGCTCCCGCATGGTCAAGGAAACCTCTGAATACGTTGTCATCAAATTGACCAAGGATGAGGTGCTCGCCGAGTTGAAAGCGAAATCGGAATGCGAGGAGTATCTGAGGGCGCCTTACAAGTGCGTGAAATGCGTTAAGTGGTTCAACTTCGAGGATGTTCTGAATGGTCACATCGAGAGGCACACGCCGGAGTATGGCGCGTTCCAATGTGACATGTGTCAGCAGTACTGTCCCAGCGCTGTGTCCCTTAGAGGACATATCAAATCTCATACAACCAGGTACAAATGCAAAGTTTGCGGGTACGTCCGTTCGTCACGGCAACACCTACTCGAGCACCACTCAACGGCGCATACAGACGCCGCGCCAGGCTACACCTGCCACACCTGCAGATACACCACCAATAAGAGAACGGTGATGCAGCGTCACGTCAAGACCCACTTACCGTCCGAGAGGCACGCCTGCCACCAATGCGGGAAGCTATTCAAGACAATCGATTCGCTCCGAGTGCACGCCGTCCGCCACGACAAGTCTCGTAGGTACCAATGCAGCGAGTGCGAGAAGGCCTTCATATACCCGTCTCTCTTGCACAAGCACGTCCAGGCCGTTCACGAGAGAGACGACTATTATTGCGTCGAGTGCGACGTCAAATTCAAATCGCCCGAGACCCTAAGGCTGCATTTCAAGAAAGCGAAAAAGCACAGAGACTTTTCCTCATACAGGTACCAGTGTCCGAATTGCGATGCGAGGTTCGTTTCTCCGTCTGCGCTGGCGGTACACCTCAGCGCCCAGCACGGAGCCGCCAAGCTCCACGCTTGCGACCTGTGCCACCGGAGGTACAGTAGCCGTGAAGCGTTGAGGGCCCACGTGTGGAGGACGCATACGCAACGCGAAAAGTCCGTCACCTGTGATATATGCGAGAAGAGCTTTTCGCGCAAAAGCGTCTTGAAGCTCCACTTGCGCACGCACACGGGAGCGAGGCCTCACGCGTGCGAATGCGGGGCAGCTTTTGCTCAGAAAGCTACGTTGAAAGCGCACGCCGCAGCCAAACACAAGAAAAAAGATATACCAAACGAACACGACACACAAATGGTACAGACGGAACAATAA
Protein Sequence: MLPGTRSKNKNLNVTLTHTCIILQILLNYVKSMNESDTFNNINSEYRCWTCLGTNDMIQPASIEETIWYQNNVKILQSNDELYLCKYCKWKIDKLLRFIRQCHLASEMVWRDLKKERINFPYLATKPIEHHELGSDDTEDDNYDIFRDEDDLPLLMMKSDEPEIELEPHGIKEEIKNEIEVNSDHVRKNDKEKRFSSRMVKETSEYVVIKLTKDEVLAELKAKSECEEYLRAPYKCVKCVKWFNFEDVLNGHIERHTPEYGAFQCDMCQQYCPSAVSLRGHIKSHTTRYKCKVCGYVRSSRQHLLEHHSTAHTDAAPGYTCHTCRYTTNKRTVMQRHVKTHLPSERHACHQCGKLFKTIDSLRVHAVRHDKSRRYQCSECEKAFIYPSLLHKHVQAVHERDDYYCVECDVKFKSPETLRLHFKKAKKHRDFSSYRYQCPNCDARFVSPSALAVHLSAQHGAAKLHACDLCHRRYSSREALRAHVWRTHTQREKSVTCDICEKSFSRKSVLKLHLRTHTGARPHACECGAAFAQKATLKAHAAAKHKKKDIPNEHDTQMVQTEQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00236111;
90% Identity: iTF_00236111;
80% Identity: -