Basic Information

Insect: Bombyx mori
Gene Symbol: -
Assembly: GCA_027497135.1
Location: CP114949.1:397373-401732[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.063 3.5 8.3 1.3 2 23 70 92 69 92 0.91

2 14 5.3e-05 0.003 18.0 0.6 1 23 98 120 98 120 0.98

3 14 0.0039 0.22 12.1 0.6 2 23 127 148 127 148 0.93

4 14 0.05 2.8 8.6 0.0 2 20 155 173 154 175 0.88

5 14 0.063 3.5 8.3 0.0 2 23 211 233 210 233 0.95

6 14 3.1 1.7e+02 3.0 1.7 2 23 240 261 239 261 0.93

7 14 0.025 1.4 9.6 0.6 3 23 269 289 268 289 0.96

8 14 0.019 1.1 9.9 0.0 3 21 297 315 296 316 0.94

9 14 0.00055 0.031 14.8 0.2 2 23 332 353 332 353 0.97

10 14 0.0024 0.14 12.7 3.1 1 23 361 383 361 383 0.96

11 14 0.004 0.22 12.0 0.7 1 23 388 410 388 410 0.97

12 14 0.2 11 6.7 3.6 1 17 416 432 416 438 0.78

13 14 2.2e-05 0.0012 19.2 0.6 1 23 444 466 444 466 0.98

14 14 0.0061 0.34 11.5 0.2 1 23 472 495 472 495 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.063	3.5	8.3	1.3	2	23	70	92	69	92	0.91
2	14	5.3e-05	0.003	18.0	0.6	1	23	98	120	98	120	0.98
3	14	0.0039	0.22	12.1	0.6	2	23	127	148	127	148	0.93
4	14	0.05	2.8	8.6	0.0	2	20	155	173	154	175	0.88
5	14	0.063	3.5	8.3	0.0	2	23	211	233	210	233	0.95
6	14	3.1	1.7e+02	3.0	1.7	2	23	240	261	239	261	0.93
7	14	0.025	1.4	9.6	0.6	3	23	269	289	268	289	0.96
8	14	0.019	1.1	9.9	0.0	3	21	297	315	296	316	0.94
9	14	0.00055	0.031	14.8	0.2	2	23	332	353	332	353	0.97
10	14	0.0024	0.14	12.7	3.1	1	23	361	383	361	383	0.96
11	14	0.004	0.22	12.0	0.7	1	23	388	410	388	410	0.97
12	14	0.2	11	6.7	3.6	1	17	416	432	416	438	0.78
13	14	2.2e-05	0.0012	19.2	0.6	1	23	444	466	444	466	0.98
14	14	0.0061	0.34	11.5	0.2	1	23	472	495	472	495	0.91

Sequence Information

Coding Sequence: ATGTACGAGAAGGAAAATATTCCCGAAATGACCGTTGAAGTCAAAACCGAATCGTTCGACATTGAAACCGAAGATCTATGCGAAGACGCCGATGTCGAGAGGAGGAACAACAATGAAGTTATCGATGATCTCAATGTTAATGAATTACAGATTACACCACAGCCGCTGGTTGACGTCTTTGTGTATTCGTGGAAATCGTACAAGTGGAAATGCTTACATTGTTCTGTTGCTTTTGACTCGATGAACGACTTGAGGAACCACAGTAAATTTGACCATAAGAAATGCTTTGGTTTTAAATGCGCAGACTGCGATGAGAGATTTAACACGTTCAGTACGTTTATCGAGCATGTTAGAGGGCATCGGGAAGACCTTAGAAATTACTGTCCGTATTGCAACAAGAGGTTCGACGACGCCGGCCAATGTATCGCGCATTTAACCGAGCACGGGATCAGCGAGGCCACAACCTGCCCCTACTGCGGCGAGATATTCCCTGCGACAGACCTCCTAGACACCCACAAGTCCATATACAAGATGGTTGAGATCCCTGAAGCCGTGACCGCAGCGCCGACCAAGGAGCGCCCTCCAAAAGTTGAGTACAAAATTCGCAAGGGCTGGATGAGGTATAAGTGGACTTGCCAGGATTGCTTCAAGGGCTTTGAAGGTGTCGTGCCTCTGAGGGCTCACGTGCAGAAAGAGCACAAGAAATGCTTCGCCATAAAGTGTATGGACTGCAACAGAAACATGAGGAACTATGCCAAGTTCGTAGAGCACGTCCACCAGCACCAGCCGTCTCTGAAAGAGTTCTGTCAGTTCTGCAACAAAAGAATTCCCAGCGAGAAGAAGTTGAAGGCCCACATCGAGGAGCACACGTCGGGTCCGCAGGCGCCGTGCTACGGCTGCGGACAGATCTTCGAAGACAACAAGATCTTGAAGAAGCACATGCTTGAATATGACGCCCCCGCGCCGCCCAAAGCGCTGCAAGGGCGGGACAGGTCCTGCGACCAGTGCGGCAAGGTGCTGGCCACGCCGGCCCGCCTCAGGACCCACAAGCTCACCCACGACCCTGACAGGCCGCGCAGCTTCATCTGCGACGTCTGCAACAAGGGCTTCCAGAGCAAAGAGAATTTGCGATGCCACAAGAGACTACACGGGACTAAGCGGCACGTTTGCCGGATCTGCCAGCGGGCCTTCTCCCTGCAGCTGGCGCTGCTGGAGCACCTGTCCAAGCACAGCTCGTTCAAGCAGTTCGAGTGCGACCACTGCGGCAAGAGGTTCTGGTCGAAGAACCGGCTGAGGCCGCACCTCAAGTGCCACGAGGAGGTCAAGCAGTTCGTCTGCAAGACCTGCGGGAAGGGGTTCAGGTTCAACAACCTGCTGGTCGCGCACGAGCGCCAGCACACGGGCACGAGGCCGCATGTGTGCGCGCTGTGCCGCCGCGCCTTCACCATCAGGCCGCTGCTGAACAAGCACATGGTGGCGGTGCACGGCACCACGCTGGTGCAGCACGAGGCAGCCACTAGGACCAGCAGGGACCAGGGGCGCTCCAAATAA
Protein Sequence: MYEKENIPEMTVEVKTESFDIETEDLCEDADVERRNNNEVIDDLNVNELQITPQPLVDVFVYSWKSYKWKCLHCSVAFDSMNDLRNHSKFDHKKCFGFKCADCDERFNTFSTFIEHVRGHREDLRNYCPYCNKRFDDAGQCIAHLTEHGISEATTCPYCGEIFPATDLLDTHKSIYKMVEIPEAVTAAPTKERPPKVEYKIRKGWMRYKWTCQDCFKGFEGVVPLRAHVQKEHKKCFAIKCMDCNRNMRNYAKFVEHVHQHQPSLKEFCQFCNKRIPSEKKLKAHIEEHTSGPQAPCYGCGQIFEDNKILKKHMLEYDAPAPPKALQGRDRSCDQCGKVLATPARLRTHKLTHDPDRPRSFICDVCNKGFQSKENLRCHKRLHGTKRHVCRICQRAFSLQLALLEHLSKHSSFKQFECDHCGKRFWSKNRLRPHLKCHEEVKQFVCKTCGKGFRFNNLLVAHERQHTGTRPHVCALCRRAFTIRPLLNKHMVAVHGTTLVQHEAATRTSRDQGRSK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00236115;
90% Identity: iTF_00236115;
80% Identity: -