Basic Information

Insect: Bombyx mori
Gene Symbol: -
Assembly: GCA_027497135.1
Location: CP114963.1:11450313-11451347[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00091 0.051 14.1 1.1 1 19 28 46 28 51 0.93

2 10 0.89 50 4.7 0.9 2 23 80 102 79 102 0.92

3 10 6.6 3.7e+02 1.9 6.7 2 23 125 146 124 146 0.95

4 10 3e-05 0.0017 18.8 0.1 1 23 150 172 150 172 0.99

5 10 0.00014 0.0079 16.6 0.4 1 23 177 200 177 200 0.96

6 10 0.0052 0.29 11.7 1.3 1 23 207 230 207 230 0.91

7 10 5.2e-06 0.00029 21.1 0.8 1 23 237 260 237 260 0.97

8 10 0.00059 0.033 14.7 5.3 1 23 266 288 266 288 0.98

9 10 4.4e-06 0.00024 21.4 1.4 2 23 294 315 293 315 0.97

10 10 2.9e-06 0.00016 21.9 0.6 1 23 319 342 319 342 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00091	0.051	14.1	1.1	1	19	28	46	28	51	0.93
2	10	0.89	50	4.7	0.9	2	23	80	102	79	102	0.92
3	10	6.6	3.7e+02	1.9	6.7	2	23	125	146	124	146	0.95
4	10	3e-05	0.0017	18.8	0.1	1	23	150	172	150	172	0.99
5	10	0.00014	0.0079	16.6	0.4	1	23	177	200	177	200	0.96
6	10	0.0052	0.29	11.7	1.3	1	23	207	230	207	230	0.91
7	10	5.2e-06	0.00029	21.1	0.8	1	23	237	260	237	260	0.97
8	10	0.00059	0.033	14.7	5.3	1	23	266	288	266	288	0.98
9	10	4.4e-06	0.00024	21.4	1.4	2	23	294	315	293	315	0.97
10	10	2.9e-06	0.00016	21.9	0.6	1	23	319	342	319	342	0.97

Sequence Information

Coding Sequence: ATGACGAAGCACAAACACAACATAACGGAGATATTAAAATGCTCGAACGCGACTCCTTTGGTGCGCCATTTGGGAACGGGTTTCGTGTGTGGCTATTGTTCAGTCCAGTTCCCAGATCCGGGCAATCTCAAACGGCATTGTCTTGAGAAACACCCGAATAGAACCGAAGCAATCCTCTGTCCCGGCTACAGGAATCTAAGCAAAGAGTATTACGTCAAACTGGACATAACAAACCTGAAATGCTCGCTATGCGATAACAAAATGGATTCCCTGAAGCAACTAATGTCGCATTTGACGCAAACCCACAGCGTGGTTATACACACGGACATAAAGAACCGAATCGTTCCGTTCAAGTTTGAAGACGACAAACTCTGTTGTTGCATATGTCGTAACGAGTACGCGAAGTTTAAGCTTCTGCAGGAGCACATGCACAGCCACTACAGGAATTACGTTTGCGACACGTGCGACGCGGGCTTCGTTAACGAAGGCTCCCTGTCCAGGCACGTGCAGACGCACCGAATCGGCATATTTGCTTGCGAGCGATGCGAAAAAGTATACGACACAATGGCCAAACTGAAGAATCACCTTAGATCGGTACACGTAATGAAGTACCAAACTCACAGATGCGGCTATTGTTATAAGGTGTTCAGTTCATACGAATCGAAGATTGAACATTTGTCCGCCGAGCACGGTGTAGTATCGGCCAAATACCCTTGTCAGGCCTGCGACAGGACTTTTGTTAACAGCAGACAGCTGAGGGTGCACATTAAGAAATTTCACATGCTCGACAGGCCGCATAAGTGTACGCATTGCGAGAAAACCTTCTTCTCCAACTGGGCTATGAAGAGTCACGCCCAAACGCATAGTCCTATTAAAATTGAGTGTAACGTTTGTCATAAAATGTATGCGAGCGCTAAAACCCTGAAAACCCATATGAGACTGCACAAGGACAGATACAAGTGTGATTTTTGTAGCAAATCGTTCGCAATGAAAGGCGCTTTGAAAAAACACCTCCAGATCATTCACGACATCTAA
Protein Sequence: MTKHKHNITEILKCSNATPLVRHLGTGFVCGYCSVQFPDPGNLKRHCLEKHPNRTEAILCPGYRNLSKEYYVKLDITNLKCSLCDNKMDSLKQLMSHLTQTHSVVIHTDIKNRIVPFKFEDDKLCCCICRNEYAKFKLLQEHMHSHYRNYVCDTCDAGFVNEGSLSRHVQTHRIGIFACERCEKVYDTMAKLKNHLRSVHVMKYQTHRCGYCYKVFSSYESKIEHLSAEHGVVSAKYPCQACDRTFVNSRQLRVHIKKFHMLDRPHKCTHCEKTFFSNWAMKSHAQTHSPIKIECNVCHKMYASAKTLKTHMRLHKDRYKCDFCSKSFAMKGALKKHLQIIHDI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00236105;
90% Identity: iTF_00236105;
80% Identity: -