Bmor013879.1
Basic Information
- Insect
- Bombyx mori
- Gene Symbol
- ZIPIC
- Assembly
- GCA_027497135.1
- Location
- CP114963.1:10995175-11001480[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.17 9.5 6.9 0.1 1 23 197 219 197 219 0.95 2 10 0.35 19 6.0 1.2 3 22 248 267 246 267 0.93 3 10 0.00079 0.044 14.3 0.3 3 23 291 311 289 311 0.96 4 10 8.2e-07 4.6e-05 23.7 0.3 1 23 315 337 315 337 0.98 5 10 0.055 3.1 8.5 0.9 1 23 342 365 342 365 0.94 6 10 0.14 8 7.2 0.4 1 23 371 394 371 394 0.92 7 10 3.3e-05 0.0018 18.6 1.2 1 23 401 424 401 424 0.98 8 10 2.1e-05 0.0012 19.2 2.6 1 23 430 452 430 452 0.98 9 10 6e-06 0.00033 21.0 2.2 1 23 458 480 458 480 0.96 10 10 1.6e-06 9e-05 22.7 1.6 1 23 486 508 486 508 0.98
Sequence Information
- Coding Sequence
- ATGGATTCCGAGATAATGGTGGAGATGTTACCGCTACTGGGCGTGTGCAGTTTATGTCTTAATGACGGCGCAGTAAAAAGTATGTTGACCGGACACAAACATAATGACACCATGGAAATATATTCTGATATGTTATTAAAATGCTTCTCCATAGACATTACGGCAGTGGAACTGGGCGACACTAAAAGATTAATATGCATGACCTGCATATCGAGATTGCGAGACTGCGTCGCTTTCAGGGTTCAAGTTGAAGCCTCCTTATACACTCTGGAGGATACATTTAAGTTAGAGAATGTAGAATCACACGGCGCTTTAGATGACCTCAAGACTGAGGCGCTCGGCGATGTGGTGGCCAATGAGATAGCGGACTACGCGAACGACACGCCCGACGCTGATGAAGATGATGACGACGAAACCGCTCTAAAGTATCTAATAAAGAAGGAATGCCACGAGGATTTCTCAGCGAATACGAGGCGACGGAGAAAGAAATACATAAAGATCAGCCTGAAACAAACCGAGGACTTGGCGGACACTGACCTGATGCTCCAGAGCGGGCTGTTCCCGTTCAAAATCAAGACAAACAGAACCTTCAGCTGCGCCGTCTGCCCAGAGAAATCTAGCAGCCTGGACGAGATAAAGGAGCACGTCACCCAGCACGACCGCTCAAACATCCACGTCGCTTTCAAGAAGATGATCTTCTCGAAGTCGCAGCGGTTCTACAAGTCCGGCGCGCGCATGTGCTGCAAGACCTGCTCGGCGCACGTGTCCGACTACGAGGAACTCTCGCGGCACGTGCAGACCTGCTCCATGTCCAAATACAACCGCTCTTGCAACAACCTACCCTTCAAACTCGAGAAAGACCAGCTGGACTGTCCGATATGCAAGAAGAACTTCCTCAACTACGTCAGCCTGAACACCCACATGAACGAGCACTACCCGGACTTTATATGCGAGAATTGCGGGAAAGCTTTCGCGTCGAAAGCTCGGCTTAGGGGCCACATGCGGACGCACGAGGTCGGCACGTTCCCCTGCAAGTACTGCAGCGCGACTTTTGATAGGATCACGAAACGCGAGAATCACGTGTCGAAAGAGCATAAGGCCGGCGTCCGCTACGCCTGCAAGCGCTGCAACATCTCTCTGACCTCGTTCTACGCGAGACAAAAGCACCTCGCTGAAGTCCACAACGAGGAGCTTAAGAGATATAAGTGCAAAAGCTGTCCTCAAAGCTACATCACCCCGGGTCACCTGTCGAGTCACGTACGCCGCGATCATCTTAACGAGAGGAATCATAAGTGCGAAAAGTGTGACCAGGCCTTTTACACGCGTAACGCGTTAAAGATGCACATGATAAAACACGACGGGGAGAGGATACACGCGTGCCCGGTCTGCAGTAAGTCGTACCAGCGGAAGAAAACGCTTCGGGAGCACATGAGGATACACAATAACGACAAGAGGTTCACTTGCCCGGTGTGCGGGAGGGCTTTCACGCAGAAATGCACTCTGAAGGGACACTTGAAAGTGCACGAGCGGAAAGTGGATATAGACGAACGGATAATGCAACCGTTGCATTCGATTTGA
- Protein Sequence
- MDSEIMVEMLPLLGVCSLCLNDGAVKSMLTGHKHNDTMEIYSDMLLKCFSIDITAVELGDTKRLICMTCISRLRDCVAFRVQVEASLYTLEDTFKLENVESHGALDDLKTEALGDVVANEIADYANDTPDADEDDDDETALKYLIKKECHEDFSANTRRRRKKYIKISLKQTEDLADTDLMLQSGLFPFKIKTNRTFSCAVCPEKSSSLDEIKEHVTQHDRSNIHVAFKKMIFSKSQRFYKSGARMCCKTCSAHVSDYEELSRHVQTCSMSKYNRSCNNLPFKLEKDQLDCPICKKNFLNYVSLNTHMNEHYPDFICENCGKAFASKARLRGHMRTHEVGTFPCKYCSATFDRITKRENHVSKEHKAGVRYACKRCNISLTSFYARQKHLAEVHNEELKRYKCKSCPQSYITPGHLSSHVRRDHLNERNHKCEKCDQAFYTRNALKMHMIKHDGERIHACPVCSKSYQRKKTLREHMRIHNNDKRFTCPVCGRAFTQKCTLKGHLKVHERKVDIDERIMQPLHSI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00236098;
- 90% Identity
- iTF_00236098;
- 80% Identity
- -