Basic Information

Insect: Bombyx mori
Gene Symbol: -
Assembly: GCA_027497135.1
Location: CP114963.1:11138537-11139571[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.026 1.4 9.5 0.1 2 23 75 97 74 97 0.93

2 9 0.00092 0.051 14.1 0.5 3 23 121 141 121 141 0.99

3 9 1.1e-05 0.00059 20.2 1.1 1 21 145 165 145 166 0.96

4 9 1.6 87 3.9 2.8 3 21 177 195 176 199 0.90

5 9 0.00056 0.031 14.8 0.1 1 23 203 226 203 226 0.96

6 9 1.7e-06 9.3e-05 22.7 0.6 1 23 233 256 233 256 0.97

7 9 0.00014 0.0078 16.6 0.4 2 20 262 280 261 283 0.92

8 9 4.2e-06 0.00023 21.4 3.0 1 20 289 308 289 311 0.95

9 9 1.5e-05 0.00086 19.7 5.8 1 23 317 339 317 340 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.026	1.4	9.5	0.1	2	23	75	97	74	97	0.93
2	9	0.00092	0.051	14.1	0.5	3	23	121	141	121	141	0.99
3	9	1.1e-05	0.00059	20.2	1.1	1	21	145	165	145	166	0.96
4	9	1.6	87	3.9	2.8	3	21	177	195	176	199	0.90
5	9	0.00056	0.031	14.8	0.1	1	23	203	226	203	226	0.96
6	9	1.7e-06	9.3e-05	22.7	0.6	1	23	233	256	233	256	0.97
7	9	0.00014	0.0078	16.6	0.4	2	20	262	280	261	283	0.92
8	9	4.2e-06	0.00023	21.4	3.0	1	20	289	308	289	311	0.95
9	9	1.5e-05	0.00086	19.7	5.8	1	23	317	339	317	340	0.96

Sequence Information

Coding Sequence: ATGCACTACGCGAGACAAAACGCCCGGACGATAGTACAGTACACCACCGCATATCCCTTTAGGCTACCCGAAAGCGAGATGATGTGCGTATACTGCTGTGACAAATATCCCAGCCCCGAGGTGTTCAGGAAACACATGGAGGACACACATCCAGCCGCCAATCATAGGACCTCCTTCTTCCATCACACCGAGGGCTACGTAAAAGCGGACTGCACCGAATTAAGATGTCGCATATGCGGCGAGAACTTTGATAAGTTACGCGCGATCGCGGAACATTTGAAGTTAGCCCACAATAAAAACGTTAAGTTGGAATACGGATTCGGCTTGCAGCCGTACAAATTGAGAATGGACCGGATGTGGTGCGGGATATGTGGTTACAAATCGGTGCAGCTACGTTCGTTGAGTAAACATTTGCAAACGCATTATTTACAGTTTACGTGTGAGTCTTGTGGCAAGTCGTATGCCACGAATACTTCCCTGCAGCACCATATTAAGTATTCGTGTTCTCGGGTCGGCAACAAGCCCATGTGCAGAACGTGTCGCCGGGAATTCGATAATCTAGAGGACAAAAGGCATCACTACAAGGACTCTAGCCATTGTCGGTTGTACGTCTGCCAGGAGTGTGGCGAGAGATTTGCGTACAACCGCGAGAAAGCCGCGCATTTGGAGAAGGTTCACGATGTTCCGCTCAAGCAACACAAATGCCCCGAGTGCGACGAAGTCTTCAAAAAAGCCTCATCTCTCGCAATGCATTTTCGGATGGTTCACACGAAGGACTTTTCATCGTGTCCTAGTTGCGACAAGAAATTTCCGAACGAATATAAATTAAATAGGCATCTGCCTGTACACACGGGAGAGAAACCCTTCAAGTGCAGCGTGTGTTCAAAGTGTTTTCCTAGGAAGTCAACTCTGAATCAGCATATGTGGATCCATAGCGAGATTAAACGGTTCACGTGTAAGATATGCGATAAGCCTTTCAATCAGAAAGTTTGTTGGAAAACGCATATGAAATCTCATCACGGCGTCAGTGATTGA
Protein Sequence: MHYARQNARTIVQYTTAYPFRLPESEMMCVYCCDKYPSPEVFRKHMEDTHPAANHRTSFFHHTEGYVKADCTELRCRICGENFDKLRAIAEHLKLAHNKNVKLEYGFGLQPYKLRMDRMWCGICGYKSVQLRSLSKHLQTHYLQFTCESCGKSYATNTSLQHHIKYSCSRVGNKPMCRTCRREFDNLEDKRHHYKDSSHCRLYVCQECGERFAYNREKAAHLEKVHDVPLKQHKCPECDEVFKKASSLAMHFRMVHTKDFSSCPSCDKKFPNEYKLNRHLPVHTGEKPFKCSVCSKCFPRKSTLNQHMWIHSEIKRFTCKICDKPFNQKVCWKTHMKSHHGVSD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -