Bmor013889.1
Basic Information
- Insect
- Bombyx mori
- Gene Symbol
- -
- Assembly
- GCA_027497135.1
- Location
- CP114963.1:11113523-11121128[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.051 2.9 8.6 1.7 1 23 75 98 75 98 0.92 2 18 0.43 24 5.7 0.1 2 21 125 144 124 147 0.88 3 18 0.006 0.33 11.5 0.7 1 23 169 191 169 191 0.97 4 18 0.00081 0.045 14.2 0.8 1 23 195 217 195 217 0.97 5 18 9.5 5.3e+02 1.4 0.5 1 23 222 245 222 245 0.81 6 18 0.07 3.9 8.1 0.9 1 23 251 274 251 274 0.86 7 18 0.00018 0.0099 16.3 0.4 1 23 281 304 281 304 0.96 8 18 0.0031 0.17 12.4 4.4 1 23 311 333 311 333 0.98 9 18 0.019 1 10.0 0.1 1 23 341 363 341 363 0.93 10 18 3.1 1.7e+02 3.0 0.4 1 23 476 498 476 498 0.86 11 18 0.0029 0.16 12.5 1.4 1 23 566 588 566 588 0.98 12 18 0.012 0.67 10.6 1.5 2 23 593 614 592 614 0.96 13 18 0.013 0.73 10.4 2.0 1 23 622 645 622 645 0.96 14 18 0.00046 0.026 15.0 3.0 1 23 651 674 651 674 0.94 15 18 0.0036 0.2 12.2 0.5 1 23 680 703 680 703 0.96 16 18 0.23 13 6.5 0.2 1 23 709 731 709 731 0.95 17 18 4.5e-07 2.5e-05 24.5 0.4 1 23 737 759 737 759 0.99 18 18 8.1e-05 0.0045 17.4 3.4 1 23 765 787 765 788 0.96
Sequence Information
- Coding Sequence
- ATGAGAAAGGCGGTTGAGCTAGGGACGGAGGTAGGCGCGATAAAACGCGGTAGGAAATTAAAGGAAGTAGTTTCCGCACGCCAAATGCGAAGGCGAAGACGCGCGAACAACATCCTCCCCGAGGAATCGGAACGTCGCATCGCCAAGACAATGATGCGACGTAACGCGACCACTATACTGGAGTGCTCGACCGCGTGGCCCTTCCGGTGGTACCACGGCGCGTTTTACTGCTCCTACTGCGACGCTAAATACCCCGAAGTGCACTCGCTTCGGCACCACGTTATCGGGAACCATTCGGACGAGCAGCCCGGCAAAAAGATATTCGCGAAATTAACGGAAAACAACATGGTCAAAGTGGAAGTGTCCGGTCTGCGTTGTCGGCTCTGTCGTTCTAGTTTCGATAGCTTAGCGTTGCTCAAGGACCACGTGGTCGCCGGTCACGGTAAAGTTTTGCATTCGGATTACAGCGACGGTGTTTTGCCTTTCAAAATGACGGATGACGCTTTCTGCTGTCAGATTTGCGGCGCGAGCTTCGCGAGTTTCGCCCGAGCAAACGAGCACATGAACAGCCACTATCAGAACCACGTGTGCGACACATGCGGCAAAGCGTTCGTGTCCGTGCCGAGGTTCAGGAAGCACGTGCAGTCCCACGAAACGGGCAGCTTCCCATGCGGAGCTTGCGGGGAGGTGTGCGAGACTAGAGCCGCTAGAACTTTTCACAGGATGCGGGTTCACCGTAAAGGAATCCGGTACACTTGTCCGTGGTGTCGTGAAGCTTTCACTTCGTACCACGTTCGGGCAAAACACCTCATCGATTTCCACGGACAACAAAGGAAGGAATACGTTTGTGACGTGTGCGGGAGGACATTCGATACGAGCTCCAAACGGTCGGGCCACCAGCGCCTGGTTCACGGACGCGCTGAGAAACAGCACGAATGCTCTGAGTGCTCTACGAATTTTCTAACTAAATCTAAACTGTATAGACACATGAAATCTCACAAAACATGGCAGAGGGATAAATTCTTGTGTGCCTACTGCCCGAGGTCGTTTGCTAACGTATTTGACGTCCGTGAGCACTCAAACGTACACAATAACAAATTAGATGTACTTTATAAGAAGGAACCACGAAATTCGTTACCTCTTAGGGTGGACATAAGTGATCTGTCGAGCAACGTCTGCGGGAGAGTCTATACTCGATTACAGGAAGTTTTACTCATTTATCCGAGGTACATTCCCTGGCTGAACCCGGTGTACACGGATGGCCTAACTCCGTACGCTTTGACGGAAATGGCACGGAATTGCGTTCATTGGTCAAACGAGACGAAAGTCTGGGTACCGAAAAGCAAATATCACGACCACAGGGACAACGCGTGTATCATAATCGAATGTTCGAACGTAGTGCCGTTCAGGTGGAAACGTGGCTTGTTCCACTGCGGCTACTGCGAACTGAACTTTGGCGACATTCAAAGTATCAAAATACATTCAGTTGTCCATCCGAACAGGATCGAGGCGGTCCGACACGCCAGGACGTATTCTAACGTTAAAATCGAAATATCGGATCTGAGGTGTGAGCTGTGCCTTCAGAGCATGGACAGCGTCGAGGAGTTCGCGGAACATCTCATCGACTCCCACGGGAAACCGATCAGAAAGGAAAAGGGCTTGGGAGTGACGCCCTATATTATGAGAGATGGGGAGTTTATATGCGGGTTTTGTAAGACTAGTTTTTCCTTGTTCACGAACGTTAACACTCACATAAACACGCACAGTCCGGGATGTATCTGCGCTAAATGCGGTAAGGCGTTCCTAACGAAATTCCGTCTGTCCGCTCATCTACTTACCCACGAGGACGAGAGCGGAGCCAAATTCAACTGCACGAAATGCGATAAAACCTTTCTAACGAAAAACTTAAGGTATGTCCATATGTCGACCGCTCACGGAGCCGAGAAGCGCTACCGTTGTCCCCACTGCAGAGAAATGTTCAAGACTTACGACCAGAGACGAAGGCATCTGAGCGAAGTCCACGGGCAGAAGCTCGACTACCCCTGCCCCCACTGCCCGGCCGTCTTCAGGATATTCAATCAGAGAACGAAACACATACGGGACGTCCACATCCAAGATAAGAGATTCGCGTGTACTTACTGCCCGGATAGATTCGTTACTGGGGCAAGATTGAGACTCCACTTAGTCAAGCATATAGGCGAAAGGAAATATCAATGTCAGGTTTGCAATAAGGCATATGCCAGACCCAGAACCTTGAAGGAACACATGAGGATCCATAATAACGACAGGAGATTCGTCTGTCCGTATTGTAGTAGCGCTTTTGTACAGAATTGCAGTTTGAAAGGTCACATGAGAACGCACCACCCCGATGCGGAGCTTTTAAAGAAAAACTAA
- Protein Sequence
- MRKAVELGTEVGAIKRGRKLKEVVSARQMRRRRRANNILPEESERRIAKTMMRRNATTILECSTAWPFRWYHGAFYCSYCDAKYPEVHSLRHHVIGNHSDEQPGKKIFAKLTENNMVKVEVSGLRCRLCRSSFDSLALLKDHVVAGHGKVLHSDYSDGVLPFKMTDDAFCCQICGASFASFARANEHMNSHYQNHVCDTCGKAFVSVPRFRKHVQSHETGSFPCGACGEVCETRAARTFHRMRVHRKGIRYTCPWCREAFTSYHVRAKHLIDFHGQQRKEYVCDVCGRTFDTSSKRSGHQRLVHGRAEKQHECSECSTNFLTKSKLYRHMKSHKTWQRDKFLCAYCPRSFANVFDVREHSNVHNNKLDVLYKKEPRNSLPLRVDISDLSSNVCGRVYTRLQEVLLIYPRYIPWLNPVYTDGLTPYALTEMARNCVHWSNETKVWVPKSKYHDHRDNACIIIECSNVVPFRWKRGLFHCGYCELNFGDIQSIKIHSVVHPNRIEAVRHARTYSNVKIEISDLRCELCLQSMDSVEEFAEHLIDSHGKPIRKEKGLGVTPYIMRDGEFICGFCKTSFSLFTNVNTHINTHSPGCICAKCGKAFLTKFRLSAHLLTHEDESGAKFNCTKCDKTFLTKNLRYVHMSTAHGAEKRYRCPHCREMFKTYDQRRRHLSEVHGQKLDYPCPHCPAVFRIFNQRTKHIRDVHIQDKRFACTYCPDRFVTGARLRLHLVKHIGERKYQCQVCNKAYARPRTLKEHMRIHNNDRRFVCPYCSSAFVQNCSLKGHMRTHHPDAELLKKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -