Basic Information

Insect: Bombyx mori
Gene Symbol: -
Assembly: GCA_027497135.1
Location: CP114962.1:16181187-16183924[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 1e-06 5.8e-05 23.3 2.6 1 23 232 254 232 254 0.98

2 11 0.0052 0.29 11.7 8.5 1 23 260 283 260 283 0.98

3 11 2.7e-06 0.00015 22.0 0.8 1 23 293 315 293 315 0.97

4 11 0.0012 0.065 13.8 2.7 1 23 322 344 322 344 0.97

5 11 0.87 49 4.7 1.9 1 23 350 372 350 372 0.92

6 11 0.0072 0.4 11.3 2.4 1 23 378 401 378 401 0.96

7 11 0.0045 0.25 11.9 1.8 2 23 407 426 406 426 0.97

8 11 6.5e-07 3.6e-05 24.0 3.7 1 23 432 454 432 454 0.98

9 11 2.9e-06 0.00016 21.9 2.1 1 23 460 482 460 482 0.99

10 11 1.8e-05 0.001 19.4 0.3 1 23 488 511 488 511 0.97

11 11 0.00017 0.0097 16.3 0.5 1 21 517 537 517 538 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	1e-06	5.8e-05	23.3	2.6	1	23	232	254	232	254	0.98
2	11	0.0052	0.29	11.7	8.5	1	23	260	283	260	283	0.98
3	11	2.7e-06	0.00015	22.0	0.8	1	23	293	315	293	315	0.97
4	11	0.0012	0.065	13.8	2.7	1	23	322	344	322	344	0.97
5	11	0.87	49	4.7	1.9	1	23	350	372	350	372	0.92
6	11	0.0072	0.4	11.3	2.4	1	23	378	401	378	401	0.96
7	11	0.0045	0.25	11.9	1.8	2	23	407	426	406	426	0.97
8	11	6.5e-07	3.6e-05	24.0	3.7	1	23	432	454	432	454	0.98
9	11	2.9e-06	0.00016	21.9	2.1	1	23	460	482	460	482	0.99
10	11	1.8e-05	0.001	19.4	0.3	1	23	488	511	488	511	0.97
11	11	0.00017	0.0097	16.3	0.5	1	21	517	537	517	538	0.94

Sequence Information

Coding Sequence: ATGGCTAACGTAAAAGGTAGAGTAAAAGCACAAAAAAGTGCAAGTACTAGAAAAAAAAGTAAAAACGAGTCATTGGCAGGTAAAAATGACACAACGGTGAGGAGACGCTACATTAACAAAGAAAAATATAACAATAACTTAGGCAAAGATATATCTGATAAAGAACCATCTTCAGATGATTATACTGACACAGAGATAAAGAGAATAGAGGAGAAAATAAAGTCTGGGAAAGACAATATTGTCATGAGAAGACCGAGTGATGTAAAGCTACTTACTACACAAGAAAGAGTTCAGTGCTTACTTCAACATGGTCATCTGTTTAAGGGAAAATTTCCTGTGAGACCGCCAGGAAAATATGTCCCCAGTAAAAAGAGATTGGCTGCTATGGCTGCTAAAATAAGACCCCCTGAGAAGGACAGATTGATATCTAGAAGTGGCCGAATAAAAAAGAAAAACAAACCTGATTTGCAACTCTTAGACAACATATTGAAGAGCGAGTTATTAATTGATGACAGTGCAGAAAGACAAACGAGGTCACAAACTGAAAAAAATCCCACCAAACCCTCTAACAATAACAATGAAAAAATCAGTAACCAAAATTCCACATCAACCTCTGAAAACAAATCTGATGACAATTCATCAACAACCAAACAAATGACACCCGACAGTGGTGTAGTTTTGACATTGGAGCTGTTTCAATGTGACTACTGCAAGAAATCATTCAGCAGTAAATCATCAATACGGAGACATATTTATATACATCTAGATTGGCACCCATACTCTTGTCCCCATTGTTCAAAACAGTTTCGTCATCATGTAAACAGGAGGATTCACATAAAGAAAAAACATAATAACCTATCTAAAGAACCTGATAAATTTGTGTGCCATATTTGTGATAAGGTTTTCACATTGAAAGAAAACCTCAGCTTGCATTTGGCAAGTCACGTTAGTAATGAAAATTCTTACAAATGCATTTATTGTGACAAAAAATTTTCATATCAATTACAGTTAAATCAACATGAGAAGCAACATTTGGTAACTGGTCGATATCAGTGCACAGTGTGCAACTTGAGTTATGGGTGTCGTAACCGATTAGCAATGCATGTCAAAAGCCACTTGAAAATAAAAGATTATGTCTGCCAATATTGTGGTAAAGACTTTCTGAGGATGAATTCTATGAGGAGACATGTACAGATTTGTCACAGTGGTCATAGAATCCAGTGTCCTATTTGCAAAAAGAACTTAAAGGGACATTTGACAGAGCATATGAGGACCCATGAGAAACGGCGACCACATGAGTGTCCTGAGTGTGGTCAATGTTTCACACAATCCACTCAACTAAATGTTCATCGCAGATCTCATTCAGGAGCACGGCCTTATGAGTGTAGAATCTGTGACAGAAAGTTTTCACATTCAAATGCCCTTATGCTTCATATTCGTAGACATACTGGAGAAAAACCATTTCCTTGTGCTGTGTGTCCATTATCTTTCTCTCAACTGCCTCACATGAAGGCACACATGCGCAAAATTCATGGTAAAGAAAATCCTTACAAGTGTCCCAAATGTGATCAGTTTTTCAAGTTGAAGGTACAGCTTGAGAATCATGCAAAGCTATGTAAGGCTAAAAATTTGTCACAAGAAGAAAGAATCCCAGCTTCATCTCGTACAGAGGAGATTGAAGTTGAGTCTGTAATGAGCCTGTCCCGAATGAGGTTCCTGCTCGCTCTGCTCTTCTCTATGATCTTATCCAAAGAAAGACTCAAGTTTTTAGGTTTCAACAAGCGTCTGATTGACGATCTTCTAGTGGATTCCCTTGAAGCAATGGGGCACGCTTCATGTGTTGATGAAAATCAATCTCCATTAAGTCGTCTAAAAACTAATATTGAGCTGCTCTTAAAACACACTGTACCAAAAGAACAGATAGAAAAATTCCAGAGGGAAAATAAAACCCTGGAAGAGCTCTTAGAAATTCTTACTGATGATAAAAAGAAGAAAGATTAA
Protein Sequence: MANVKGRVKAQKSASTRKKSKNESLAGKNDTTVRRRYINKEKYNNNLGKDISDKEPSSDDYTDTEIKRIEEKIKSGKDNIVMRRPSDVKLLTTQERVQCLLQHGHLFKGKFPVRPPGKYVPSKKRLAAMAAKIRPPEKDRLISRSGRIKKKNKPDLQLLDNILKSELLIDDSAERQTRSQTEKNPTKPSNNNNEKISNQNSTSTSENKSDDNSSTTKQMTPDSGVVLTLELFQCDYCKKSFSSKSSIRRHIYIHLDWHPYSCPHCSKQFRHHVNRRIHIKKKHNNLSKEPDKFVCHICDKVFTLKENLSLHLASHVSNENSYKCIYCDKKFSYQLQLNQHEKQHLVTGRYQCTVCNLSYGCRNRLAMHVKSHLKIKDYVCQYCGKDFLRMNSMRRHVQICHSGHRIQCPICKKNLKGHLTEHMRTHEKRRPHECPECGQCFTQSTQLNVHRRSHSGARPYECRICDRKFSHSNALMLHIRRHTGEKPFPCAVCPLSFSQLPHMKAHMRKIHGKENPYKCPKCDQFFKLKVQLENHAKLCKAKNLSQEERIPASSRTEEIEVESVMSLSRMRFLLALLFSMILSKERLKFLGFNKRLIDDLLVDSLEAMGHASCVDENQSPLSRLKTNIELLLKHTVPKEQIEKFQRENKTLEELLEILTDDKKKKD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -