Bmor008136.1
Basic Information
- Insect
- Bombyx mori
- Gene Symbol
- -
- Assembly
- GCA_027497135.1
- Location
- CP114957.1:2873947-2878166[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 3.5 2e+02 2.8 0.1 3 17 59 73 57 74 0.83 2 10 0.00037 0.021 15.3 1.7 1 23 188 210 188 210 0.96 3 10 0.00034 0.019 15.4 0.7 3 23 219 240 218 240 0.89 4 10 0.00023 0.013 16.0 2.6 2 23 249 270 248 270 0.97 5 10 0.00021 0.012 16.1 0.1 2 23 277 298 276 298 0.96 6 10 0.024 1.3 9.6 2.1 1 23 306 329 306 329 0.94 7 10 2.2e-06 0.00012 22.3 0.5 1 23 334 356 334 356 0.98 8 10 1e-06 5.6e-05 23.4 0.4 1 23 364 386 364 386 0.99 9 10 4.5e-08 2.5e-06 27.6 1.9 1 23 392 414 392 414 0.98 10 10 1.1e-05 0.00059 20.2 1.0 1 23 420 442 420 442 0.98
Sequence Information
- Coding Sequence
- ATGTCAAATAATAAAAAAATTGCTGTCATGAATGAAATTTCAAAAGTGTGTCGTGCATGCCTAACAGTATGTGAGAACACCACTTACGAACTTTTTGAAAATGTGTCGGCCGATTTGTTTTACTATTGCACTTCGATTAAGCTATACAAAGATGAGAAATTGCCAAAAGTGATTTGCGAAATTTGCCACAAATTACTTGTACAATATTCTGAATTCAAAAATACTTGTATCACATCCCAAAATGCACTGCTTGGTTTGAAAAAATCTGTAAAAAATGAAAGTACTGAAGCAGATACAAGTTGGGATGATGACAATGACTATGGAAATCTCTACATTGACAAAAATGAAAAAGAGGAGAAGAGACACAATGATTATCAAAATTTTGTTGTAAAAGTTGAAAAATTGCATCCTGAATACAATGGGTTGCCGTTGCAAGATTTTAATGCTGAAACTATTGTAGAAGACATTAAGCCAAAGGAAAGAAAATTAAAGATACAGTTAAAACTACAAGGAAATAAAAGAAAAAAGAAAAATATTGTGAAACAGAAGAATCATTTCATATTTACATGTGATATTTGCAATAAAAAATTCAATTATTTAGATAGATTTCAAGCGCACAAATTGGAGCATGAAGGCAAAGTTACATCTATATTCTGTCAACCGTGCAACAAAACATTTGTGACGTGGAGCGGTCTACGTCGACACAAGGAGAACGAACACACACAAGTTAAGCTGGAAAGTTTGAAATGTAAGGTCTGCGGCAAGTTGAGTAAGAACAAACACACACTTAAGGTTCACGAGCGGATACACGGGGAGAGACCTTTACTGATGTGCGACGTTTGCGGAAAGGGATTCACGACCGCAGTCATTTTGAAAACACATTTAGAGACCCACAACGAGCACAGAGAGAGAAGGTTCACGTGCGAACAGTGCGGCCGGAAGTTCTTAACGCAGACCGTGCTCCACACGCACGTGGCCCGCCGCCACTCCGACCGCCGCTACATCTGCCACGTCTGCGACCAACCCTTCATCGACAAATACAACTTGGCCCAACATTTGATCAGGCACAACAGCGCCGACCGCAAGTATTACAAGTGTGACGTTTGCGACAAACTAATATCGTCCCAATCGAACCTGACTTTGCACATGCGGATACATTCGGGCGAGCGACCGTATAATTGCACGTACTGCCCTAAGACGTTTATATCGAGGAAGAACTTGCGGGAGCATATAAGGACCCACACTGGCGAGAGGCCCTACAGATGCGCGGTCTGCGATCAGGAATTTTCGCAGAGTAGCTCCATGAAACGTCATTCGAAGATACACGAACGACAAATAACAACAAATTAA
- Protein Sequence
- MSNNKKIAVMNEISKVCRACLTVCENTTYELFENVSADLFYYCTSIKLYKDEKLPKVICEICHKLLVQYSEFKNTCITSQNALLGLKKSVKNESTEADTSWDDDNDYGNLYIDKNEKEEKRHNDYQNFVVKVEKLHPEYNGLPLQDFNAETIVEDIKPKERKLKIQLKLQGNKRKKKNIVKQKNHFIFTCDICNKKFNYLDRFQAHKLEHEGKVTSIFCQPCNKTFVTWSGLRRHKENEHTQVKLESLKCKVCGKLSKNKHTLKVHERIHGERPLLMCDVCGKGFTTAVILKTHLETHNEHRERRFTCEQCGRKFLTQTVLHTHVARRHSDRRYICHVCDQPFIDKYNLAQHLIRHNSADRKYYKCDVCDKLISSQSNLTLHMRIHSGERPYNCTYCPKTFISRKNLREHIRTHTGERPYRCAVCDQEFSQSSSMKRHSKIHERQITTN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00236064;
- 90% Identity
- iTF_00236064;
- 80% Identity
- -