Basic Information

Insect: Bombyx mori
Gene Symbol: -
Assembly: GCA_027497135.1
Location: CP114962.1:235574-249428[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00099 0.055 14.0 1.7 1 23 191 213 191 213 0.99

2 11 0.18 10 6.8 0.0 1 23 220 243 220 243 0.92

3 11 0.0015 0.081 13.4 1.7 1 23 274 297 274 297 0.97

4 11 0.019 1 10.0 1.5 2 23 302 324 301 324 0.96

5 11 0.00082 0.046 14.2 0.1 1 20 334 353 334 355 0.93

6 11 0.02 1.1 9.9 0.0 3 23 367 388 366 388 0.93

7 11 1.8e-05 0.001 19.4 2.9 2 23 395 417 395 417 0.97

8 11 5.7e-06 0.00032 21.0 1.0 1 23 431 453 431 453 0.99

9 11 6.8e-08 3.8e-06 27.1 0.2 1 23 459 481 459 481 0.99

10 11 3.8e-07 2.1e-05 24.7 0.9 1 23 487 509 487 509 0.98

11 11 0.00011 0.0061 17.0 0.9 1 23 515 538 515 538 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00099	0.055	14.0	1.7	1	23	191	213	191	213	0.99
2	11	0.18	10	6.8	0.0	1	23	220	243	220	243	0.92
3	11	0.0015	0.081	13.4	1.7	1	23	274	297	274	297	0.97
4	11	0.019	1	10.0	1.5	2	23	302	324	301	324	0.96
5	11	0.00082	0.046	14.2	0.1	1	20	334	353	334	355	0.93
6	11	0.02	1.1	9.9	0.0	3	23	367	388	366	388	0.93
7	11	1.8e-05	0.001	19.4	2.9	2	23	395	417	395	417	0.97
8	11	5.7e-06	0.00032	21.0	1.0	1	23	431	453	431	453	0.99
9	11	6.8e-08	3.8e-06	27.1	0.2	1	23	459	481	459	481	0.99
10	11	3.8e-07	2.1e-05	24.7	0.9	1	23	487	509	487	509	0.98
11	11	0.00011	0.0061	17.0	0.9	1	23	515	538	515	538	0.97

Sequence Information

Coding Sequence: ATGGAAAATAAAAACGTTTGTATCGCTTGTTTAGCGTCCGATACGAGACTGCACGACATGTATCGATACGGCTTAGTAGAAATATATGAGGATATCACAACTATTCAAATAACTGCAGACGAAAGTAATTATCAGCACTATTTGTGCAGCGTTTGCGCCACACAGCTCATGAAGTGTGCTACCTTCAAAGAGAAATGCCACAGGGCTCAACGTTTAATGAACATGTTAGGTTCGTTACCAATTCAAGAAGTCGACAGAGAAACATACCACTTGAATACACCCCTCGCCGTACACACCTTGCATTCTATGTCTCTGTCCACCCAAGTGGATTACATCAAGGAAGAATATGATAATGTGGAGAATTGTGCATATCTGGATGATTTTAAAGTTATGTCACCAATAAACGAAGAGACGATAGAAACAGAGGACTTAAAAGAAGAAATAGACAGTAAATCCTACGACAATGTGAAGTTGTTTGAGGAAGACATCCATGTCATGATGCTGTCCGAAGAGGAGCAACTAGCCGAGATCCAACGTAGGAAAGAAAGCGTCAACTACAAGTGCTCTTTGTACAAATGCGAGAAATGTTATAAGGGTTTCATGACCGATGTCACATACACCAATCACATGATAAGGCACGATCCGTGCAGCGGCGCGCACGAGTGCGGCATATGCGGCATCCGGCGCGCGTCGGTCCGCGAGCTGCGCCTGCACGCCGCCTCCGCGCACGAGCGGCACTTCCTGTGCGCGCACTGCTCGCACGTCACGCGCTCGCTGCACCGCGCCCGCGAGCACCGCGCCTCGCACGGCGGATGTCGCTTCCGCTGCGAACGGTGCGGCTCGAGCTTCAAAGCGTCGACCACGTATTTGTCTCATATGAGATTGAGACACCCGACTCATGATAGGTGCCCGCTGTGCCACAAGCGGTTCCTAGGACGGCTCGGCCTCAAGATGCACATGAAGAGGGCGCACGGAGAATGCAAGAAGAGTCTCGAGGAGCACGTGTGCGACGGCTGCGACGTCAACTTCAACAGCGAGGACGCCCTCGAGCGACACCGCTCCGTGCTCAGCGACGTCTCCTGTCAGGACCTGAGATCGTGCGCGGAATGTGGGTTCGGTTTCCAGACTGAGGAGCTGCTGCAGGAGCACGTGGACTCCGTGCACGCCGTGGACGAGACCGCCAAGTGCAGCAAGTGCGACAAGAACTTTGCGAACAAGCGGACGCTGTCGAAGCACATCCAGCGGTACCACCTCGGCAACCTGCGCGCCGTGCGCCCCGCCGAGACCGAGTACGTGTGCGAGATGTGCGGCACCAGGTGCTCGTCCGCGGTGTCGCTGCTCAACCACCAGAGGACCCACACCGGGGAGAAGCCCTACCAGTGCCCGGACTGTCCGAAGAGGTTCAGCGTGTCGCAGGGGCTCCGGATCCACATCCGGACGCACACGGGCGAGAGACCGTTCAAGTGCACCAACTGTCCCAAGGCGTTCAAGAACAAGGCGGCGCTGAACCGACACAACCGGGTGCACACCGGCGTGCGTCCGTACGCGTGCCCGCACTGCCTGAAGGCGTTCTCCCAGTCCAACTCGATGAAGCTGCACGTGTCGACCGTCCACCTCAAGATGCCGGCGCCCTATCGCAACAGAAGGAAGAACAACAGCAGCTAG
Protein Sequence: MENKNVCIACLASDTRLHDMYRYGLVEIYEDITTIQITADESNYQHYLCSVCATQLMKCATFKEKCHRAQRLMNMLGSLPIQEVDRETYHLNTPLAVHTLHSMSLSTQVDYIKEEYDNVENCAYLDDFKVMSPINEETIETEDLKEEIDSKSYDNVKLFEEDIHVMMLSEEEQLAEIQRRKESVNYKCSLYKCEKCYKGFMTDVTYTNHMIRHDPCSGAHECGICGIRRASVRELRLHAASAHERHFLCAHCSHVTRSLHRAREHRASHGGCRFRCERCGSSFKASTTYLSHMRLRHPTHDRCPLCHKRFLGRLGLKMHMKRAHGECKKSLEEHVCDGCDVNFNSEDALERHRSVLSDVSCQDLRSCAECGFGFQTEELLQEHVDSVHAVDETAKCSKCDKNFANKRTLSKHIQRYHLGNLRAVRPAETEYVCEMCGTRCSSAVSLLNHQRTHTGEKPYQCPDCPKRFSVSQGLRIHIRTHTGERPFKCTNCPKAFKNKAALNRHNRVHTGVRPYACPHCLKAFSQSNSMKLHVSTVHLKMPAPYRNRRKNNSS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00236063;
90% Identity: iTF_00236063;
80% Identity: -