Basic Information

Insect: Bombyx mori
Gene Symbol: -
Assembly: GCA_027497135.1
Location: CP114949.1:1467434-1472238[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00067 0.037 14.5 0.2 2 23 216 237 215 237 0.97

2 11 1.5e-05 0.00083 19.7 4.9 1 23 245 267 245 267 0.99

3 11 3.4e-05 0.0019 18.6 0.4 1 23 274 297 274 297 0.96

4 11 0.0089 0.49 11.0 1.1 1 23 302 324 302 324 0.97

5 11 2.2e-05 0.0012 19.2 3.7 1 23 330 352 330 352 0.98

6 11 8.5e-07 4.7e-05 23.6 0.4 1 23 358 380 358 380 0.95

7 11 3.7e-06 0.0002 21.6 1.3 1 23 386 408 386 408 0.98

8 11 4.6e-08 2.6e-06 27.6 0.4 1 23 414 436 414 436 0.98

9 11 7.4e-05 0.0041 17.5 0.2 1 23 442 464 442 464 0.98

10 11 0.00023 0.013 15.9 3.6 1 21 470 490 470 492 0.95

11 11 1.3e-06 7.1e-05 23.1 0.1 1 23 498 520 498 520 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00067	0.037	14.5	0.2	2	23	216	237	215	237	0.97
2	11	1.5e-05	0.00083	19.7	4.9	1	23	245	267	245	267	0.99
3	11	3.4e-05	0.0019	18.6	0.4	1	23	274	297	274	297	0.96
4	11	0.0089	0.49	11.0	1.1	1	23	302	324	302	324	0.97
5	11	2.2e-05	0.0012	19.2	3.7	1	23	330	352	330	352	0.98
6	11	8.5e-07	4.7e-05	23.6	0.4	1	23	358	380	358	380	0.95
7	11	3.7e-06	0.0002	21.6	1.3	1	23	386	408	386	408	0.98
8	11	4.6e-08	2.6e-06	27.6	0.4	1	23	414	436	414	436	0.98
9	11	7.4e-05	0.0041	17.5	0.2	1	23	442	464	442	464	0.98
10	11	0.00023	0.013	15.9	3.6	1	21	470	490	470	492	0.95
11	11	1.3e-06	7.1e-05	23.1	0.1	1	23	498	520	498	520	0.98

Sequence Information

Coding Sequence: ATGGATGCAGTGAAATTCGAAAAGATATGTCGGACATGTCTCTCTGAATCGACGGATATGAGGTCGCTAAATTCTAATATAAATAACGACAATCGTAAACTACAAGACGTTTTAGAATTTGTTATGGATAGAAACATTATTAATGATGAGAGACTACCGAAGTTTATCTGCTTCGAGTGCGAAACTGTAATGATTAAGGCTGAATCCTTCAAACGTCGTTGCTTAGAATCTGAGTCGGCTTTGAAAAATTGCATCGGGGCAACAGAAAGAAAGTTAAGTTTTATAGAAATTGATCAAAACACGATACTAAAGAACGAAAGCAACTACGAATGTATCACGGAAGCTTTGAAACATTCCGAAACAGACACAGCTTTTTGTGTTAAGAATTTAAATGACATCACAATAAAGAAATGTTCATTTGAAAACTTCGATATATTATCGGATGATGTTAATGACGCTGATTCAATAAAAGAAGAATTGGACGATTGCAACGTCCCCGACGACGACACCCAAAGCCTAAATTTAAAACAAACAGTCAAATACAAAGATAAAAACAGATCAGACTTAAAAACGTGCAATGGTAACAAGTTAAAGAAAGTTAAAAAGAAAACGAACCCCCGGTTAATACCAATAACGAACCAAATAGAATGTCAAAAATGCGATCAGAAATTCGCTAATGTATCAGCTTGGAGCTCACACCAGCAAATGCACAAGGAAAAAATGAAAGAAACATTTCAATGCAACGTATGCCCAAAAAAGTTTAAAAAACAAACCTCATTGCATACTCATCTAAACAGACATGATCGAGACTCATCAAAGTACATATGCGATGTTTGTAAAAGGGAATTCAAGTACAAAGGGTACTTAGAAAGTCATATAATATCGATGCACACTCGTAACGGTTTCACATGCGAATTCTGTATGCAATCATTCGATAGTAAAGACACATTCGAGATACATCGGAATGCTCATATAATAGAGAAAAAACATCAGTGCCTTATCTGTCATAAAAGTTTCTATATGGCTTCGACATTGCGAGACCATTTGAGGGTGCACACAGGGGAAAGACCGTTTTTATGTGCGATATGTGGGAAGGGTTTCACGCAGAAGAATAACTTGGCTCAGCACGTGAGAAGACATCAGGGTAACAAGCCCCACCAGTGCGAAAATTGCGAGAAAAGTTTCGTTTCCAAAGGGGAGTTAGAAGCTCACAGTCGGAAGCACAGCGGCGCTCATCCGTTCGTGTGTGACGACTGCGGGCGTGGCTTCACTACCTCCAGTTCACTCGTCAAACATAGAAGGATCCACACTGGCGAGCGACCATACGCTTGTGATCTCTGTCCACTTCGTTTCGCGGTTTCCGGCACCTTGAAGAACCACCGTCGGCGGCACACCGGTGAGAGGCCCTACCACTGCTCGTATTGCGAGAAGGCTTTTGTGCAGCGCAACGACCTGATATCGCACATCCGCTGCCACACCGGCGAGCGTCCGTACGTGTGCGCGCAGTGCGGACAGAGCTTCCGCAAGCCGTCCGGCCTGCGCGCGCACGCCCGGGTGCACGCCGCACACGCGCCGGCGCCCTGA
Protein Sequence: MDAVKFEKICRTCLSESTDMRSLNSNINNDNRKLQDVLEFVMDRNIINDERLPKFICFECETVMIKAESFKRRCLESESALKNCIGATERKLSFIEIDQNTILKNESNYECITEALKHSETDTAFCVKNLNDITIKKCSFENFDILSDDVNDADSIKEELDDCNVPDDDTQSLNLKQTVKYKDKNRSDLKTCNGNKLKKVKKKTNPRLIPITNQIECQKCDQKFANVSAWSSHQQMHKEKMKETFQCNVCPKKFKKQTSLHTHLNRHDRDSSKYICDVCKREFKYKGYLESHIISMHTRNGFTCEFCMQSFDSKDTFEIHRNAHIIEKKHQCLICHKSFYMASTLRDHLRVHTGERPFLCAICGKGFTQKNNLAQHVRRHQGNKPHQCENCEKSFVSKGELEAHSRKHSGAHPFVCDDCGRGFTTSSSLVKHRRIHTGERPYACDLCPLRFAVSGTLKNHRRRHTGERPYHCSYCEKAFVQRNDLISHIRCHTGERPYVCAQCGQSFRKPSGLRAHARVHAAHAPAP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00236039;
90% Identity: iTF_00236039;
80% Identity: -