Basic Information

Insect: Bombyx mori
Gene Symbol: -
Assembly: GCA_027497135.1
Location: CP114962.1:223285-224895[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 2.3e-05 0.0013 19.1 1.4 2 23 94 116 93 116 0.92

2 14 6.8e-05 0.0038 17.6 0.9 2 23 122 144 121 144 0.94

3 14 0.00065 0.036 14.5 0.7 3 23 153 174 152 174 0.90

4 14 7e-06 0.00039 20.7 0.7 2 23 182 204 181 204 0.95

5 14 7.7e-06 0.00043 20.6 0.9 2 23 211 233 211 233 0.95

6 14 0.0035 0.19 12.3 0.3 1 19 240 258 240 259 0.92

7 14 0.0077 0.43 11.2 3.0 2 21 270 289 269 292 0.95

8 14 0.00027 0.015 15.8 0.2 2 23 308 330 307 330 0.92

9 14 0.00092 0.051 14.1 0.6 2 23 339 361 338 361 0.95

10 14 9.6e-08 5.4e-06 26.6 0.5 2 23 367 389 367 389 0.97

11 14 0.0041 0.23 12.0 5.0 2 23 397 419 396 419 0.97

12 14 0.00015 0.0081 16.6 0.5 2 23 426 447 426 447 0.97

13 14 8.2e-07 4.5e-05 23.7 2.6 1 23 453 476 453 476 0.97

14 14 0.0072 0.4 11.3 1.6 2 20 490 508 489 510 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	2.3e-05	0.0013	19.1	1.4	2	23	94	116	93	116	0.92
2	14	6.8e-05	0.0038	17.6	0.9	2	23	122	144	121	144	0.94
3	14	0.00065	0.036	14.5	0.7	3	23	153	174	152	174	0.90
4	14	7e-06	0.00039	20.7	0.7	2	23	182	204	181	204	0.95
5	14	7.7e-06	0.00043	20.6	0.9	2	23	211	233	211	233	0.95
6	14	0.0035	0.19	12.3	0.3	1	19	240	258	240	259	0.92
7	14	0.0077	0.43	11.2	3.0	2	21	270	289	269	292	0.95
8	14	0.00027	0.015	15.8	0.2	2	23	308	330	307	330	0.92
9	14	0.00092	0.051	14.1	0.6	2	23	339	361	338	361	0.95
10	14	9.6e-08	5.4e-06	26.6	0.5	2	23	367	389	367	389	0.97
11	14	0.0041	0.23	12.0	5.0	2	23	397	419	396	419	0.97
12	14	0.00015	0.0081	16.6	0.5	2	23	426	447	426	447	0.97
13	14	8.2e-07	4.5e-05	23.7	2.6	1	23	453	476	453	476	0.97
14	14	0.0072	0.4	11.3	1.6	2	20	490	508	489	510	0.94

Sequence Information

Coding Sequence: ATGGAAGTCACACCAGTGGTAACTGTGAAATGCGAGCCGGTGGATGTACTCGAGCAAGGCGATATGGACCAGCTGCAGAACCAAAGCGAGCCGGCTCCAGGACACAATGCCGTCAACTATCCACAATACTCCCAACAAATAATAAACAATATGGCATATTATTTTACGGCTAATTCATTGAACACTGAAATTAAATTGGAAACTGACGTGAAACATGAGCCCGAAGAGTCCGAAGATGCTGATGAATCTAAGAAAAAGATCAAAAAGGAAGATAGAGTGAAATGTCCGTTATGCCCTAAGACGTTCAAAAATCAGGCCAACATGAAAAGTCACGTGACGCATTTGCACACCGAGAACGCCGTGGAGTGTCCGCAGTGCAATAGGAACTTTAAATCCTATGCTCACTTGAAATCGCACGTCGATAGCGTCCACGTGGCCGAGGGCGAAGCGAAAGCCTGCGACTTGTGCGGTAAAGAATTCGCCAATAAAAAGAAACTGAGCAACCATAAGTTCTATGCTCACTCCAAGCCCGAAGAAAGGGTGACTTGCCCAATTTGCAATAAATCATTTGCTAAAAAGTACAAACTAAGAGTGCACAACCGTAATGTACACAATCCCGGCGAAGCAGCGAAATGCCCTCAATGCGATAAAGAATATAAAAGCAAGATGCTGCTCCGAAGGCACATGCTGTGGAGCCATCCCGAAGAGGGAAAAACATATGTGTGCGAGGACTGCGGGAAGGAGTTTCCTACTTTCCCCGTGTACAAGAAGCATACCTGGAACGTACACGGCGCCAGTCGCGAGATGACCTGCGAAATATGCCATAGGACGTTGGCATCGAAGAAATCGTGGCTCCGTCATATGCGATGCGTGCACAAGGACGGCAGACCTGCCGCTAAGCAGATGAAGGTCGGTACCTTACCGTGCATGATATGCGACAGAAAGTTCACAACGAACACAGCGCTTTATTGGCACTTGGAGCAAACGCATTCTGAAGTACAACAAAACTCGAAAACCTGCCCCATTTGTTCTAAAAAGTTCACGGAATACTATGTGATGAGGAGGCATCTGGAAATGGTGCATCCCATCGAAACTGCGACCTGTGAGATCTGCAATAAGACCTTTAAATCTGCCGCCAACCTGGAGAGCCACATGCGAGTGACCCACGCCCCGCCAGAAGCGGCCAAGCAGTGCGACATGTGCCAGAAGATATTTAAATGCTCAATGCACTTGCGCATTCACATGAACACCGTCCATCCAAAGGACGGTAAAGCAACTTGTGACATATGCAACCGGGAGTTTGCGTCGAAACGATATCTAGCCTCGCACAAGCAAATACACGTTAAAGTCAGACAGTTTCACTGTGTGATCTGCGGCAAGTCCTTTAAAAGGCAGGTGGATCTGAGCAAGCACACGAGGAAAGTTCACAATAAGAAAAAACCTAAAACTGAAGAGGTGCCAGTATCTAAGTGTCTGAAGTGCGGTACATGTTTTACTAATGATCAGGAGTTGCATGAGCATATAGTGTCATGTGAGAATACCGGGGTCAATCTGTCCATAGTGAAGATCGAAGTTGAGGAGTTGGATGAAGGGCAAGAGGTTTGCATGTGA
Protein Sequence: MEVTPVVTVKCEPVDVLEQGDMDQLQNQSEPAPGHNAVNYPQYSQQIINNMAYYFTANSLNTEIKLETDVKHEPEESEDADESKKKIKKEDRVKCPLCPKTFKNQANMKSHVTHLHTENAVECPQCNRNFKSYAHLKSHVDSVHVAEGEAKACDLCGKEFANKKKLSNHKFYAHSKPEERVTCPICNKSFAKKYKLRVHNRNVHNPGEAAKCPQCDKEYKSKMLLRRHMLWSHPEEGKTYVCEDCGKEFPTFPVYKKHTWNVHGASREMTCEICHRTLASKKSWLRHMRCVHKDGRPAAKQMKVGTLPCMICDRKFTTNTALYWHLEQTHSEVQQNSKTCPICSKKFTEYYVMRRHLEMVHPIETATCEICNKTFKSAANLESHMRVTHAPPEAAKQCDMCQKIFKCSMHLRIHMNTVHPKDGKATCDICNREFASKRYLASHKQIHVKVRQFHCVICGKSFKRQVDLSKHTRKVHNKKKPKTEEVPVSKCLKCGTCFTNDQELHEHIVSCENTGVNLSIVKIEVEELDEGQEVCM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00236035; iTF_01490339;
90% Identity: iTF_00236035;
80% Identity: -