Bmor013886.1
Basic Information
- Insect
- Bombyx mori
- Gene Symbol
- zfh1
- Assembly
- GCA_027497135.1
- Location
- CP114963.1:11090540-11096974[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 29 0.093 5.2 7.8 0.4 1 23 82 105 82 105 0.95 2 29 0.27 15 6.3 1.0 2 23 130 151 129 151 0.95 3 29 0.021 1.2 9.8 0.1 1 23 175 197 175 197 0.96 4 29 0.00015 0.0082 16.6 0.2 1 23 201 223 201 223 0.98 5 29 0.00023 0.013 16.0 0.4 1 23 228 251 228 251 0.95 6 29 0.019 1.1 9.9 0.6 2 23 258 280 258 280 0.93 7 29 0.015 0.85 10.2 5.5 1 23 287 310 287 310 0.97 8 29 8.3e-05 0.0046 17.4 4.7 2 23 317 338 316 338 0.96 9 29 0.00012 0.0065 16.9 1.7 1 23 344 366 344 366 0.98 10 29 0.018 1 10.0 2.4 1 23 492 514 492 514 0.97 11 29 0.082 4.6 7.9 0.3 2 23 540 561 540 561 0.94 12 29 0.23 13 6.5 0.6 1 20 582 601 582 604 0.93 13 29 0.0054 0.3 11.7 1.5 1 21 608 628 608 630 0.95 14 29 0.00066 0.037 14.5 0.3 1 23 635 658 635 658 0.95 15 29 7e-05 0.0039 17.6 0.5 2 23 665 687 665 687 0.97 16 29 0.0017 0.094 13.2 1.8 1 23 694 717 694 717 0.98 17 29 0.078 4.4 8.0 7.0 2 23 724 745 723 745 0.96 18 29 1.1e-06 6.1e-05 23.3 1.9 1 23 751 773 751 773 0.99 19 29 0.0094 0.52 10.9 0.1 2 23 777 799 776 799 0.91 20 29 0.24 14 6.4 1.0 1 23 842 864 842 864 0.87 21 29 0.00048 0.027 15.0 0.2 2 23 892 914 891 914 0.95 22 29 0.00081 0.045 14.2 3.8 2 23 938 959 937 959 0.96 23 29 0.052 2.9 8.5 0.3 2 23 963 984 962 984 0.96 24 29 0.026 1.4 9.5 5.4 1 23 989 1012 989 1012 0.95 25 29 2.2 1.2e+02 3.4 3.4 2 23 1024 1046 1023 1046 0.92 26 29 0.02 1.1 9.9 0.8 1 23 1052 1075 1052 1075 0.96 27 29 5.8e-06 0.00032 21.0 1.3 2 23 1080 1101 1079 1101 0.96 28 29 0.00033 0.018 15.5 1.8 1 23 1107 1129 1107 1129 0.95 29 29 0.002 0.11 13.0 1.2 1 23 1135 1158 1135 1158 0.97
Sequence Information
- Coding Sequence
- ATGAATTTCGGAAAGTTACCCTTGAAAAGAGCGATAACGTCACAGGAATCCTTCGCACGGCCAGTCTCCACTCCGTCGAGGAGTCCGTCGCCTCTCACATTTGGGGGATCGCCGATTTTAGAAGTCCTCAAAACTAAAGCTGTCTGCAAACCTAGGTATCCCAGAAATCCCGACATCAGACAAAACGCGCTCCTCATTTTCGAATTCTCATCCGCCTACCCTTTCGTGTACGGGAACAACACGTTCAAGTGCTTCGTCTGCTCCCAGCCCTACCAAGAGCTGTCCACGTTGAAACTGCATGTCAAGGATGCCCACACTTTTGCGTCTCTAAAGAGACTGATCAACAACAGACGCGAGAACATTCTCAAAGTTGACATCGAGGACTTAGAGTGTAAACTGTGCAACCACAAACCCCGAGACTTGGTCGAACTAAAGCGGCATTTGAACGAGCACGGGAAACCGGTCGATGTGGACATCCACGACAACCTGATACCCTTCAAACTCAGCACGGTCAACGGCTCGTACAAATGCGTGATATGCGACGAGAGCTTCATCAAGGTCCGGATCCTCGTGATCCACATGAGCGTCCACTTCAACAACTACAGCTGCGAGATTTGCGGCTCGGTGTTCATGACCTTGAGGCTGCTGAAGAAGCATCTGGAGGTGCACGAGACCGGCAACTTTCCTTGCGACAAATGCAGTAAGGTTTTCAGCACGCCGTACAAGAGGACCGTTCACGTGCGTGGGGTGCATCTGAAGCAGTTCCCGCGGCGGTGTCCGTTCTGCCCGGAGCGATTCAATTCGAATTACAAGCGGACGATCCACCTTCAGGACGTGCACAACCAGTCGACGCGTGTGCACAAGTGCGAGACCTGCGGCCGCGGTTTCAATTTGAAGTACCACCTGATCTGCCACATCCGATCGGTTCACCTGCAGGAGCGGAACCAGCAGTGCGACGTGTGCCACCAGAGGTTCTGCAACAAGGAGTCCCTGAAGAGGCACATGGTCATACACACGGGCGAAAAAAATCACAAATGCGACATATGCGGAATGGCTTTCCTCAGAAGGAAAAATTTGAAAGACCATTTGAGGTTGCACGAGATAGGTTCAGTCCAGAAATCGGATTCAACTATGACGATTAGGGATGACGATGGTACAGACGTAACTCTGACCGTGTTGAAGACTCCTATATCGCTGGGCACCTTAAAACCCGAGAACAGAAAAAATACGACGCAGAATATTCGTGAAGAACCCAAGAATATCAATAAAATGCTGGTTTTGAAGGAGCCTCTGTCGCTAGATCGAATCGATTGGGATAACCTCACCGAAGTCACGTTTAACGTGAAAACAGTGGAGGAGCGATACGTTTGTAAACAAAAGAAGCGCGATAAAGAATCGAAAGAATGGATAAGAAGCAGTATGAGCATCTTCGATAATACATATACGTATCCGTTCGTGCATACGGGCGGTCGATACAAATGCTTCGTTTGTAGGAAAACATTTTTCGAAACCAATTCGCTGCGAGACCACACGCTCGAACACAAGTCCGAGGACCTGGAGAAGGAACTGCAAACCAAACAGAGCGACGTCAACATCAAAATTGACGTATCGAACGCGCAATGTAAACTGTGCGACCTAAAGTTTGGCGGTTACAAGGAATTGAAGCTTCATTTGGTCGAGCACGGCCTGGCAGTAAATCTAACCGAGGACAATCTTATACCGTTCAAACTGAATTCGGACGTGTTCGAGTGCCAAGTCTGCGGAGAGGGCTTTCTGAAGCTTCGGCTACTGATCGTGCATATGAGCTGCCATTACAATAATTACAGCTGCGAGATATGCGGGTCGGCGTTCATGTCGCTGCGTCTACTGAAGAGGCATCTACAGTGCCACCAGACCGGCAACTTCCCGTGCGATAAATGCGACAAGGCCTTTAGTAGCGCCACGAAACGGACTCTGCACGTGCGCGGAGTTCATCTAAAGCTGCTCCCGAGGAGATGCCCGATTTGCCCGGAGCGTTTCAACTCGAATTACCAAAGGACCAAACATTTGAGGATCGCGCATAACCACTCGACTGGGCTTTACCGCTGCGAGACTTGCAGCCGAGAATACGATCTCAAATACCATCTTTTATTGCACATCCGATCTGTACATTTGCGGGAGCGAAATCAAGAATGTCACGTTTGTCATTCGAGGTTCTTCTCTAAGTATTGTCTCTCCAGGCACATGGTCGTTCACACGGGGGAGAAGGGCTTCAAATGCGACACCTGCGGTAAGGGCTTTTCCAGGCGGAAGAATCTTCTGGAACATTCTAGAACTCACGAGGTTCAGACGTGCGCTGCTTGCGGGCTGCAGTTCGTAGATCATTCCAATTTAATTGCACACGTTAGTAATGTGCATGACGAGACACTGTCGCGGCCATGCCCCAGAACTAGCATTTGGCAAATGACTATATCGGAGAGACAGAACGCGGCAACGTTCATTGAACACACGACAGTGAAGCCGTTCTTTTACCAGCAAGCGAATTTCAAGTGCTTCTACTGCAACGAGGTCTTCCCGGAAATACACGCGGTGCTACAGCACACGGCCTTCCATCCAACGCCGGACAGGACGAGCTTACTAAAACAATACCTGCGCAAAGGGAAAAGAGTCATCAAAGTCGATATATCGTCGTTGAAATGCAAAATCTGCGACCAAAAGTACTCCGATTTGGATGATATCAGGAGGCACTTGACGGTCGCCCACAAGAAAGAGTTCAATTCGGCCGGTAATGGTCTAACGGCGTATGATTTAAGCACAAACAACAGGATGCTGTCATGCCACAAGTGCTTGAAGACTTTCAACTCGTTTTTCCTCCTGAACAGGCATATGAACGCTCATTACAACGTGGTCTGCGAGACCTGCGGCCTGGGCTTCATGTCGCACCAGAGGCTGATCAATCACAGGATCGTCCACGAAGACGGCGTCCACAGATGCGACAAGTGCCACGAAGCGTTCCCGACCAAACTGAAATTGCGCTACCACATCTTCAAGAGGCACGAAGCGGCGAACGCAAAGAAAAGGAAACCTTTAAAATGTCCCCATTGCTTGGAGAGATTCTCGGAGCATTACCGCAAAATGACCCACCTGAAGGAGGCTCACGGGATAACGTTCACGTTCGAGTGTCAAAGCTGCAAATCTGTTTTCCCCACGCGCCGAGCCCTAACGGAGCATACGACGAAACTGCACACCCAAAAGATACAGTGTAAGGTCTGTGGTAAGTGCTTCGGGACGCAGTCACTGTTAAAGATGCACGCCAGAGGGCACAGCGGTGAAAGGAATTTCCTCTGCGACGTCTGCCAGAAGGCGTACATGCATGAGAGGACTTTGCGTCAACACATGCGAGTCCACGGCACAGCTTGGAGGTTCGTGTGCCCGGAATGCGCTAGCGGCTTCCACAATAGGAACGATTTTAACAAGCACATGAGGCAGTGGCATCCACAGTGGCAGCTGAGGACCGCAGTGAAGAAATTCGGAAACGAAATCGATCATTGA
- Protein Sequence
- MNFGKLPLKRAITSQESFARPVSTPSRSPSPLTFGGSPILEVLKTKAVCKPRYPRNPDIRQNALLIFEFSSAYPFVYGNNTFKCFVCSQPYQELSTLKLHVKDAHTFASLKRLINNRRENILKVDIEDLECKLCNHKPRDLVELKRHLNEHGKPVDVDIHDNLIPFKLSTVNGSYKCVICDESFIKVRILVIHMSVHFNNYSCEICGSVFMTLRLLKKHLEVHETGNFPCDKCSKVFSTPYKRTVHVRGVHLKQFPRRCPFCPERFNSNYKRTIHLQDVHNQSTRVHKCETCGRGFNLKYHLICHIRSVHLQERNQQCDVCHQRFCNKESLKRHMVIHTGEKNHKCDICGMAFLRRKNLKDHLRLHEIGSVQKSDSTMTIRDDDGTDVTLTVLKTPISLGTLKPENRKNTTQNIREEPKNINKMLVLKEPLSLDRIDWDNLTEVTFNVKTVEERYVCKQKKRDKESKEWIRSSMSIFDNTYTYPFVHTGGRYKCFVCRKTFFETNSLRDHTLEHKSEDLEKELQTKQSDVNIKIDVSNAQCKLCDLKFGGYKELKLHLVEHGLAVNLTEDNLIPFKLNSDVFECQVCGEGFLKLRLLIVHMSCHYNNYSCEICGSAFMSLRLLKRHLQCHQTGNFPCDKCDKAFSSATKRTLHVRGVHLKLLPRRCPICPERFNSNYQRTKHLRIAHNHSTGLYRCETCSREYDLKYHLLLHIRSVHLRERNQECHVCHSRFFSKYCLSRHMVVHTGEKGFKCDTCGKGFSRRKNLLEHSRTHEVQTCAACGLQFVDHSNLIAHVSNVHDETLSRPCPRTSIWQMTISERQNAATFIEHTTVKPFFYQQANFKCFYCNEVFPEIHAVLQHTAFHPTPDRTSLLKQYLRKGKRVIKVDISSLKCKICDQKYSDLDDIRRHLTVAHKKEFNSAGNGLTAYDLSTNNRMLSCHKCLKTFNSFFLLNRHMNAHYNVVCETCGLGFMSHQRLINHRIVHEDGVHRCDKCHEAFPTKLKLRYHIFKRHEAANAKKRKPLKCPHCLERFSEHYRKMTHLKEAHGITFTFECQSCKSVFPTRRALTEHTTKLHTQKIQCKVCGKCFGTQSLLKMHARGHSGERNFLCDVCQKAYMHERTLRQHMRVHGTAWRFVCPECASGFHNRNDFNKHMRQWHPQWQLRTAVKKFGNEIDH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -