Bmor013941.1
Basic Information
- Insect
- Bombyx mori
- Gene Symbol
- -
- Assembly
- GCA_027497135.1
- Location
- CP114963.1:11599412-11603117[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 29 0.001 0.058 13.9 0.4 1 23 30 52 30 52 0.95 2 29 0.48 27 5.5 0.1 2 23 80 102 79 102 0.92 3 29 0.13 7.3 7.3 1.0 2 23 123 145 122 145 0.95 4 29 0.00076 0.043 14.3 3.4 1 23 150 172 150 173 0.96 5 29 0.13 7.3 7.3 1.5 1 23 177 200 177 200 0.95 6 29 0.00095 0.053 14.0 1.3 2 23 203 225 202 225 0.97 7 29 0.064 3.6 8.3 3.6 1 23 300 323 300 323 0.93 8 29 0.31 17 6.1 0.1 3 23 353 374 351 374 0.95 9 29 0.00013 0.0073 16.7 0.3 1 23 396 419 396 419 0.96 10 29 4.4e-06 0.00025 21.4 0.3 1 23 424 447 424 447 0.92 11 29 0.0011 0.06 13.9 1.4 2 23 454 476 454 476 0.97 12 29 0.0026 0.15 12.6 0.3 2 23 482 504 481 504 0.94 13 29 0.00011 0.0059 17.0 1.4 1 23 508 531 508 531 0.98 14 29 0.028 1.6 9.4 0.7 2 23 538 559 537 559 0.97 15 29 3.6 2e+02 2.8 0.4 1 9 565 573 565 576 0.90 16 29 0.001 0.057 13.9 0.3 1 23 618 640 618 640 0.96 17 29 0.6 33 5.2 0.0 2 23 668 690 667 690 0.90 18 29 0.001 0.058 13.9 0.4 3 23 712 733 712 733 0.98 19 29 0.0027 0.15 12.6 0.8 1 23 738 761 738 761 0.96 20 29 0.0016 0.087 13.3 0.9 1 23 766 789 766 789 0.95 21 29 0.086 4.8 7.9 0.2 2 23 792 814 792 814 0.90 22 29 0.019 1.1 9.9 1.1 1 23 895 918 895 918 0.95 23 29 4.1e-05 0.0023 18.3 0.2 2 23 991 1013 990 1013 0.96 24 29 0.0001 0.0057 17.1 0.1 3 23 1020 1041 1019 1041 0.91 25 29 0.0018 0.098 13.2 3.3 2 23 1046 1067 1045 1068 0.95 26 29 0.00026 0.015 15.8 0.8 1 23 1073 1096 1073 1096 0.97 27 29 0.00097 0.054 14.0 5.8 1 23 1100 1123 1100 1123 0.97 28 29 0.0017 0.096 13.2 0.2 3 23 1131 1151 1129 1151 0.96 29 29 0.005 0.28 11.8 2.3 1 23 1157 1179 1157 1179 0.95
Sequence Information
- Coding Sequence
- ATGTACAGTGCTAATTACAACAGGAGAAAGAATCTAATCATTTTGTTCAACAACACAACATTGATTCCGTTCAAATGGCGCATGAAATACATGTGCTTTTATTGCGGCCGATCTTTAGATGATTATAGCGAACTGAGAGAACATACGATTGATCACGGTATCTGTACGGAAAACGATCGTGCCATAAGACTAGTCAAGGCGCCGGATAGTGAAGTTAAAATTGATGTTTCAGATGTAACATGTAGATTATGCGATAAGATGTTGTCGAATATGGACGATATTATAGATCATTTGGTGTCTAATCACAGGAAAAGCTACGACAGGGAGGTGCAATTGGCCATTGCTCCCTACAGCTTGAGAGACTTGAAATGTTTATCTTGTAGCGAGAATTTCAGGCATTTTCGGGCTCTAGTCGTTCACGTTAATCGCGCACACCCTAATAATTGTTTCGTTTGTCGCGATTGTGAACTAAAATTCAACAAAAAGAGGGATTTGGATCGCCACTATAGGGTGCATCACAGGAAAAGGTTTAAATGCTCCAAATGTTTGGACGACTTCAGCACTTACGCGGATTATCAGCGCCACCGTAGTAACGCTCATATATCGACTTGTAACATATGTTTTAAAGCTTTCTCCACGAGCACCAAAAGATTGGTGCACATGAAAATGGATCACGATCTAGACTTAGCCGAATGCGGGTTTTGTAAGAAAATTATGACGACTAGGCAAGGTTTTCTTAGACACGCGACGCAGTGTACAGCGAAATACGAGTTAAAGTCGCCTCAGGTGGTTGTGGTGGACGACGACAAAAAGCCGTCGATCAAAGAAATACGCAAGGAGATTGCCAACATATTTAATATGTCGACAGCTATGCCTTTCAAGTTTTTCATGACAAAATTTCGATGTTTCTATTGTTCGGAGGACTTTCAGAAATGTGACTTGCTAAAGAAACATACCCTCGCCGAGCATCCGTACTGTGACGTGTCTATAAAATCGATGAGACTACGCCACAGATATGAGGGCTTACAGATTAAGGTGGACACTTCGGCTCTGGCTTGCAAACTTTGCTTTGAGCCCGTAGACAGTATGAGCTCTTTATTCGATCATTTGAAATCGGAGCACAAGAGTTCGTGTGACGAATCCGTGGCCGCTCACATTCAGGGCTTCAAATTGATGGAAGACAACTACGTTTGTCCGTATTGTGATGAAGTCTTCAGGTATTTCAGTGTGCTCTTGAAGCACGTCAGCGTCCGTCACACTGACAACAAATACATATGTGTTTACTGCGGGAAGTCGTTTAGAACGAATCCGAATTTGAGATCACACGTGATCGGTCGCCATGACAACCCGAGCCGTGAGAAGTGTGAGAAGTGCGGGCTAGTGTTGAAGAGCAAAAACACCCTCAGACTTCACACGAGAAAAGTGCACTGTAACAAGCGGGTGGAGTGTACGGAATGCCAGGAGACGTTCATCACGAATTATTCAATGTACGTACACAAGCGCGACGTGCACGGTATCGGTCATAAATGTGATTATTGCTTAAAAATTTTCGCTAAGAATTCGGCCATGGTGAATCATATGCGACGGGCGCATCTAAAGGAGAAGAACGTGCAGTGCTCGGTGTGTTTCGAGAGTTTCTTTGACGTGCAACGTCTTAAAACGCACATGGTCAAGCATGCTGGCAAGCGTAACTACCAGTGCGACGTTTGCGATAAAAACTCGCCGTTCGAGCCGAGTACCGAACCGCCCGCGCCAGGCGTTTTCCTGGGCTGTACCTCTGAGCGACGACGGAAAAACTTGAAAATAATCTTCAATTGCACAACGATAATTCCGTTTAAATGGCGCGGAAGGTATTTGTGCTTTTACTGTGGCAAGCCTTACGCTGAATACGCTGAATTAAAGAGTCATACTCAGTCGCACGCCCCTTGTACCACGAAGGATTACGCTCTGAGAATCATAAGAGGCAGTCACGTCGAGATCAAGATAGACGTTTCAGAGATTGTGTGCAAAATTTGCTACGAACCTTTTGATAGTTTCGAGGAAATCGTGAATCATTTAATCGGTAAACATAAATTAAGTTACGAAAAGCAAATTGGCACTCCATACCAAGAGTACAGATTGAGTGATTGCGGCTGTACCCGCTGTGGGGAGCGATTTGCTTATTTTACTAATCTGGTCAAACACGTGAACACCGCACATCCACAGAACCGCTTCATATGCGATAAATGCGAAATGCCCTTCAACAAGAAACGCGATTTGGCAGTACACTTTAGGAATTATCACGGCGAAGAGAACTACAATTGTGTGCAATGCTCGCAGAATTTTAAATCCTTGGTCACGTTACGCCGCCACCAAAATGACATACATTTTAGGCAGTGCAAAATTTGTGGTAGTCGCTTCGAATCCGTTGCGGTTTTGCGTAAGCACGAGGTATCCGAACATCCTGACGACGGCAATTACAAATGTCGGTATTGCTGCAAGGAACTACACAGTGCGCCGGGTCTGAGGTTGCATTACGGGAAATGTAAGGTTCGAGCCATCGCCTCAATCGACCCTAAATGTCCGTTAATATCCGGAGAAATTCGCAGGCGTAAACTGAAAAACAATTTGAAAGCAATAAGGAATAATATTCAATGCGTCTTAAACATGTCCACTGCGATACCTTTTAAGTACTTCGCCAAGTATTCATGTTTTTATTGTACACTAAAGTTTGTTGAGTTTGAAGATCTGCGACAGCATACCATGTTAGAACATCCTGTATGTGACGTTAAAGAGAAATACATGAGGCAGTGTAAGGGTGATAGGGTTTGCGTTAAAATTGATATATCTTCTCTCAAATGTAAGCTGTGCTGTATGCCAATGGGGGACCTTGATTTGCTGATCGATCACTTAATATCGGAACACAAAGCTGGTTATGATAAGTCAATAAAAGGTTGTCTCGATCCTTATCGCATAATCAAAGATAGCATTCCTTGTCCTCTATGCGAAACCGTTTTTCGTTACTTCAGCACCCTGCAGCGTCATATCAACTCCGATCATAGCAACAACAACGCGATCTGCGATTTCTGCGGGAAGAGCTTCAACAAGCTCAGTAATTTGGTCGTGCACATTGGGCTCGCGCACATGGGTGCGACCCAGTGTGGAATCTGCGGCGCGAACTTCAAGAACAACTGGTGCTTATCCCGACATAGGGCGAAACATCACGGCGTCAAAGATTACAAGTGCACGAAATGCCCCGAGCTTTTCATATCTTCGTATCAAATGCAGAAGCACCTAATTAAAGTGCACAACGAGGGACACAAATGCGTTCATTGCGGTAGGCTGTTTACGAGGAATTCTTTCATGAAAGACCACATCAGAAGAACGCATTTGAAAGAGAAAAATATCGCATGCGCAGTGTGCAATGAAAAGTTTTTCGATAACTATCTGCTGAGGCTGCACATGGTAAAGCATGACGGGGAAAGGAAGTTTACTTGTGAGGTCTGCGGCAAGGCGTTCCTGAGGAGAAGCAACCTCAATTGTCACAAAGAGATGCATAAAAAGTATGGACATATTTAG
- Protein Sequence
- MYSANYNRRKNLIILFNNTTLIPFKWRMKYMCFYCGRSLDDYSELREHTIDHGICTENDRAIRLVKAPDSEVKIDVSDVTCRLCDKMLSNMDDIIDHLVSNHRKSYDREVQLAIAPYSLRDLKCLSCSENFRHFRALVVHVNRAHPNNCFVCRDCELKFNKKRDLDRHYRVHHRKRFKCSKCLDDFSTYADYQRHRSNAHISTCNICFKAFSTSTKRLVHMKMDHDLDLAECGFCKKIMTTRQGFLRHATQCTAKYELKSPQVVVVDDDKKPSIKEIRKEIANIFNMSTAMPFKFFMTKFRCFYCSEDFQKCDLLKKHTLAEHPYCDVSIKSMRLRHRYEGLQIKVDTSALACKLCFEPVDSMSSLFDHLKSEHKSSCDESVAAHIQGFKLMEDNYVCPYCDEVFRYFSVLLKHVSVRHTDNKYICVYCGKSFRTNPNLRSHVIGRHDNPSREKCEKCGLVLKSKNTLRLHTRKVHCNKRVECTECQETFITNYSMYVHKRDVHGIGHKCDYCLKIFAKNSAMVNHMRRAHLKEKNVQCSVCFESFFDVQRLKTHMVKHAGKRNYQCDVCDKNSPFEPSTEPPAPGVFLGCTSERRRKNLKIIFNCTTIIPFKWRGRYLCFYCGKPYAEYAELKSHTQSHAPCTTKDYALRIIRGSHVEIKIDVSEIVCKICYEPFDSFEEIVNHLIGKHKLSYEKQIGTPYQEYRLSDCGCTRCGERFAYFTNLVKHVNTAHPQNRFICDKCEMPFNKKRDLAVHFRNYHGEENYNCVQCSQNFKSLVTLRRHQNDIHFRQCKICGSRFESVAVLRKHEVSEHPDDGNYKCRYCCKELHSAPGLRLHYGKCKVRAIASIDPKCPLISGEIRRRKLKNNLKAIRNNIQCVLNMSTAIPFKYFAKYSCFYCTLKFVEFEDLRQHTMLEHPVCDVKEKYMRQCKGDRVCVKIDISSLKCKLCCMPMGDLDLLIDHLISEHKAGYDKSIKGCLDPYRIIKDSIPCPLCETVFRYFSTLQRHINSDHSNNNAICDFCGKSFNKLSNLVVHIGLAHMGATQCGICGANFKNNWCLSRHRAKHHGVKDYKCTKCPELFISSYQMQKHLIKVHNEGHKCVHCGRLFTRNSFMKDHIRRTHLKEKNIACAVCNEKFFDNYLLRLHMVKHDGERKFTCEVCGKAFLRRSNLNCHKEMHKKYGHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -