Basic Information

Insect: Bombyx mandarina
Gene Symbol: stc_1
Assembly: GCA_003987935.1
Location: NW:4593803-4614482[+]

Transcription Factor Domain

TF Family: zf-NF-X1
Domain: zf-NF-X1 domain
PFAM: PF01422
TF Group: Zinc-Coordinating Group
Description: This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 2 1.3e+04 -4.2 1.6 15 19 440 444 439 444 0.81

2 15 2 1.3e+04 -4.2 4.4 3 10 473 480 471 480 0.81

3 15 3.5e-05 0.22 11.1 18.1 4 19 488 503 486 503 0.93

4 15 1.3e-07 0.0008 18.9 12.7 1 19 539 557 539 557 0.97

5 15 0.91 5.7e+03 -3.0 0.3 8 11 562 565 561 565 0.86

6 15 1.3e-05 0.08 12.5 14.3 1 18 594 611 594 612 0.98

7 15 1.4e-05 0.089 12.3 11.8 1 19 653 675 653 675 0.87

8 15 2 1.3e+04 -5.2 2.2 6 10 705 709 705 709 0.94

9 15 0.028 1.8e+02 1.8 9.1 1 11 715 725 715 728 0.93

10 15 0.08 5e+02 0.4 0.2 3 10 729 736 729 738 0.93

11 15 1.1e-05 0.066 12.8 14.9 3 19 744 760 742 760 0.92

12 15 5.5e-05 0.35 10.5 6.4 10 18 807 815 804 816 0.92

13 15 0.36 2.3e+03 -1.7 1.0 8 13 821 826 820 827 0.83

14 15 7.8e-09 4.9e-05 22.8 12.2 1 17 852 870 852 876 0.82

15 15 0.0034 21 4.8 7.6 1 13 882 893 882 894 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	2	1.3e+04	-4.2	1.6	15	19	440	444	439	444	0.81
2	15	2	1.3e+04	-4.2	4.4	3	10	473	480	471	480	0.81
3	15	3.5e-05	0.22	11.1	18.1	4	19	488	503	486	503	0.93
4	15	1.3e-07	0.0008	18.9	12.7	1	19	539	557	539	557	0.97
5	15	0.91	5.7e+03	-3.0	0.3	8	11	562	565	561	565	0.86
6	15	1.3e-05	0.08	12.5	14.3	1	18	594	611	594	612	0.98
7	15	1.4e-05	0.089	12.3	11.8	1	19	653	675	653	675	0.87
8	15	2	1.3e+04	-5.2	2.2	6	10	705	709	705	709	0.94
9	15	0.028	1.8e+02	1.8	9.1	1	11	715	725	715	728	0.93
10	15	0.08	5e+02	0.4	0.2	3	10	729	736	729	738	0.93
11	15	1.1e-05	0.066	12.8	14.9	3	19	744	760	742	760	0.92
12	15	5.5e-05	0.35	10.5	6.4	10	18	807	815	804	816	0.92
13	15	0.36	2.3e+03	-1.7	1.0	8	13	821	826	820	827	0.83
14	15	7.8e-09	4.9e-05	22.8	12.2	1	17	852	870	852	876	0.82
15	15	0.0034	21	4.8	7.6	1	13	882	893	882	894	0.95

Sequence Information

Coding Sequence: ATGTCGCAGTGGAACAACTCTTACTCCTACAATGGTCAATACCAAGCTAACGGCTGGAACCGAGATGTTAATGGCCAATATTCAAATTCACAGTATTATAATAACAGGCAAGATTCAAATAATCAATATGTGAGCTTCAATGAGTTCTTAACTCAAATACAAGGCGACAGTGCATCAGTCCCGGGCAATTCGgttcattataataatgtaagaTATGAAAACTATCCCACCACTCAATACAATTATCAAAACATGCCGTCTACTTCACAGAATAGATCACTAGATAGCTACAATTATCAAACAAACGTGAACCCAAGGAATCCCCAACAGTACCAAATGAATATGCAGAATCAATATGTGCCATCTGAAAgctataataatgaaattatactAAAATCTAACTTAACACCTACTGCAACAGAATTTGTACCAAAGAGTATGGCTAAACAGATCACTGGTCACCAAAGTTTATCAGAACCTGCAACTAATAATGTTAAGCATAATGATGCAAACtggagagaaagagagagtttACAACAAAATGGTGAAATTGTAACTAATCAGGTTTCTGAAAATAACAAAAGCCAATACTCCAAAACTCAAAACAGGGTACCTAATAGCCAAGATAATGCGCATTCAAGTGAATCCAATGTTAAAGTTAACGAACCAAGGCACAGAAATGGACATCGTAACAATGAGGCTAATGGTAGTtactacaatcataataatcaaAGTGAAAGTAAATCTCacagtaatgaaataaataaccaTAGTGATTCGAGTAGTAGATACTATGAAAATCAAAGAAATTATGATAGGAATGAGAAGAAAATCATATCAAAGACGAATCCCAAATCAAAACCAAGAGATGCAGATGCTCGTACATTCTACAACAGTTCCGTTACTAAGGACAGTCAAGATGTTCGGAATGGAAGAGGTGAGAGTTCTGGCAGGCAAAGGAATTGGGCTGGAAGTCAAAGAATCAAATCTTCAGAGAAGTCAACTCCTGAAGATGAGCAATATGCTACCTCATACACTCAACAGAAACAGGAGAAAGTAGAGAGAAATAAAACAGAGAACATTCCAAGCCCAAACAGGTTTAGAAGCAAAAATATTGAACAAgcaataaacaaagaaatgaCACAAAGGGAACGCCTGACTGATCAATTAGAAAAAGGAACATTAGAGTGTCTAGTATGTTGCGAGAGAGTAAAACAAACAGAATCCGTGTGGTCGTGTGGCAACTGCTACCATGTACTCCATCTTAGGTGCATAAGAAAATGGGCAATGAGTAGTTTGGTCGaGGGTAAATGGCGTTGCCCGGCTTGCCAAAATTCTAATGAGACGATTCCAACTGCGTGCCGGTGCATGTGCGGCGCGATACGGTCGCCTGAATACCAGCGAGGTGTGTGCGTCGCCCACACGTGCGGGAAGCAATGCCGTCGCTCTCGCGCCTGCCCACATCCATGTACTTTATTATGCCACCCTGGACCTTGTCCACCGTGCCAAGCCACCGTTACAAAAGAATGTGGCTGCGGTGCCGAAAATCGATCAGTGATGTGCAGCAGCAAGCTACCGCAAGTGTGTGGGCGTCCTTGTCAACGCATGCTACAGTGCGGCGTACACAAATGCATGAAGGAATGTCACGAGGGTCCCTGTGAAGACTGCACCGAGTCTGTTACACAAgtGTGCCATTGCCCGCTGGCGAAGACTCGTGAGGTCCCGTGCCGCGTGGAGTCGTCGTGGTCGTGCGGCGGCGCGTGCGGGCGCGTGCTGTCGTGCGGCGCGCACGTGTGCCGGAGCACGTGCCACGAGCCCCCCTGCCCCCCCTGCGACCTGCTGCCTGCCGCGCTCATCACATGTCCGTGCGGGAAGACTAgAATACCAAAAGACAAACGCAAGTCGTGCACGGATCCGATCCCGTTGTGCGGAAACATCtgcgccaagccgctgccctgCGGCCCGGCCGGTGACAAACATTTCTGCAAACTAGACTGTCATGAAGGTCCTTGTCCAGTTTGTCCTGACAAGACCTTACTGCCGTGCCGCTGTGGTCATTCGAACCGCGAGGTTCCGTGCGCTGAGCTACCGGACATGTATAACAATGTGTTCTGTCAGAAGAAATGTAATAAGAAACTGTCGTGCGGTCGGCACCGTTGCCGCGCGTGCTGCTGCGCGGACCCGCAGCACCGGTGCGGGCTCGTGTGCGGGCGCTCGCTCGCCTGCCAGACGCACCGCTGTCAGGACTTCTGCCACACCGGACACTGCGCGCCGTGCCCCACGCTCAGCTTCGAGGAGCTGAGCTGTACGTGCGGGCGCGAGGTGCTGCTGCCGCCCGTGCGCTGCGGCACGCGGCCCCCGCCCTGCAGCGCGCCGTGCCGCCGCGCGCGCCCCTGCGAGCACGAGCCGCTGCACTCGTGCCACACCGGGGACTGTCCGCCCTGCGTCGTGCTCACCACCAGGACCTGCCACGGCGGACACGAGGAACGAAAAACCATCCCGTGTTCGCAAGAAGAGTTCTCGTGCGGCCTCCCGTGCGGCAAACCTCTCCCTTGCGGTAAACATACCTGCATCAAGGTCTGTCACAAGGGACCGTGCGATGCCGGCAAGTGCATCCAGCCGTGCAACGAGAAGCGTGCGAGCTGCGGGCACCCGTGCGGCGCCGCGTGCCACTCcggcgcggcgggcggcgcgggcgcGCTGTGCCCGAGcgcggcgccgtgccgccgcacCGTGCGCGCCACGTGCCCCTGCAAACGGAAATCGGCCGAGAGACCCTGCTTCGAAAACGCACGGGATTACGATAAAATGATGAGTGCTCTTGCGGCCACCAAGATTCAAGAGGGGGGCTCTGTTGATTTGTCCGACGCACAGCGCGCCGTCAATATGCTCAAAACGCTGGAGTGCGACGACGAGTGCCGCGTGGAGGCGCGCACGCGGCAGATGGCGCTGGCGCTGCAGATCCGCAACCCGGACGTGTCCGCCAAGCTGGCGCCGCGCTACAGCGAGCACGTGCGCGCCACCGCCCAGCGCGAGCCCGCCTTCGCCTACCACGTGCACAACCAGCTCACCGAGCTCGTGCACCTCGCCAAGAAGTCGAAACAGAAGACTCGCTCGCACTCGTTCCCGTCGATGAACAGACAGAAGCGGCAGTTCATCCACGAGCTGTGCGAGCACTTCGGCTGCGAGAGCGTGGCCTACGACGCGGAGCCCAACAGGAACGTGGTGGCCACTGCCGACAAGGAGAAGTCGTGGTTGCCGGCGATGAGCATAATGGAGGTGTTGTCGCGTGAGGCGGGCCGGCGGCGCGTGCCCGGCCCCGTGCTGCGGACCGCGCACTCCTCCGCCGCCTCTTCAGGCTCGACGACCTCCTCCTCCGCCGCTAACAAGTCGCCAGGCGGTTGGGCGACGCTGACGTCATCGAACGCCTGGGCGTCGCGCAGTCAGCCCAAGCAGACGGCGGCCGAACCCAAGATCGATTACTTCGACAATCCGCCAGAAAATTAG
Protein Sequence: MSQWNNSYSYNGQYQANGWNRDVNGQYSNSQYYNNRQDSNNQYVSFNEFLTQIQGDSASVPGNSVHYNNVRYENYPTTQYNYQNMPSTSQNRSLDSYNYQTNVNPRNPQQYQMNMQNQYVPSESYNNEIILKSNLTPTATEFVPKSMAKQITGHQSLSEPATNNVKHNDANWRERESLQQNGEIVTNQVSENNKSQYSKTQNRVPNSQDNAHSSESNVKVNEPRHRNGHRNNEANGSYYNHNNQSESKSHSNEINNHSDSSSRYYENQRNYDRNEKKIISKTNPKSKPRDADARTFYNSSVTKDSQDVRNGRGESSGRQRNWAGSQRIKSSEKSTPEDEQYATSYTQQKQEKVERNKTENIPSPNRFRSKNIEQAINKEMTQRERLTDQLEKGTLECLVCCERVKQTESVWSCGNCYHVLHLRCIRKWAMSSLVEGKWRCPACQNSNETIPTACRCMCGAIRSPEYQRGVCVAHTCGKQCRRSRACPHPCTLLCHPGPCPPCQATVTKECGCGAENRSVMCSSKLPQVCGRPCQRMLQCGVHKCMKECHEGPCEDCTESVTQVCHCPLAKTREVPCRVESSWSCGGACGRVLSCGAHVCRSTCHEPPCPPCDLLPAALITCPCGKTRIPKDKRKSCTDPIPLCGNICAKPLPCGPAGDKHFCKLDCHEGPCPVCPDKTLLPCRCGHSNREVPCAELPDMYNNVFCQKKCNKKLSCGRHRCRACCCADPQHRCGLVCGRSLACQTHRCQDFCHTGHCAPCPTLSFEELSCTCGREVLLPPVRCGTRPPPCSAPCRRARPCEHEPLHSCHTGDCPPCVVLTTRTCHGGHEERKTIPCSQEEFSCGLPCGKPLPCGKHTCIKVCHKGPCDAGKCIQPCNEKRASCGHPCGAACHSGAAGGAGALCPSAAPCRRTVRATCPCKRKSAERPCFENARDYDKMMSALAATKIQEGGSVDLSDAQRAVNMLKTLECDDECRVEARTRQMALALQIRNPDVSAKLAPRYSEHVRATAQREPAFAYHVHNQLTELVHLAKKSKQKTRSHSFPSMNRQKRQFIHELCEHFGCESVAYDAEPNRNVVATADKEKSWLPAMSIMEVLSREAGRRRVPGPVLRTAHSSAASSGSTTSSSAANKSPGGWATLTSSNAWASRSQPKQTAAEPKIDYFDNPPEN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00237153;
90% Identity: iTF_00237153;
80% Identity: -