Bman006409.1
Basic Information
- Insect
- Bombyx mandarina
- Gene Symbol
- nfxl1
- Assembly
- GCA_003987935.1
- Location
- NW:168776-171390[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 2 1.3e+04 -7.8 5.6 15 19 134 138 133 138 0.81 2 20 0.13 7.9e+02 -0.3 0.4 4 10 169 175 168 175 0.95 3 20 3.1e-07 0.0019 17.7 15.9 3 19 186 202 185 202 0.95 4 20 1 6.6e+03 -3.2 1.2 6 10 227 231 226 232 0.85 5 20 1.9e-07 0.0012 18.3 16.7 3 18 239 254 237 255 0.91 6 20 0.52 3.3e+03 -2.2 2.0 6 10 280 284 279 285 0.78 7 20 1.7e-10 1.1e-06 28.1 14.8 1 19 290 308 290 308 0.99 8 20 3.6e-07 0.0022 17.5 18.6 3 19 344 360 343 360 0.93 9 20 1.9 1.2e+04 -4.0 0.7 1 4 369 372 369 372 0.94 10 20 0.00031 1.9 8.1 16.9 1 18 394 411 394 412 0.91 11 20 6.3e-10 4e-06 26.3 12.6 1 19 421 439 421 439 0.99 12 20 0.068 4.3e+02 0.6 0.9 5 11 467 473 467 475 0.92 13 20 0.00037 2.3 7.8 6.6 9 19 487 497 485 497 0.89 14 20 0.078 4.9e+02 0.4 7.5 3 12 508 517 500 517 0.81 15 20 0.31 1.9e+03 -1.5 3.5 14 18 546 550 546 551 0.87 16 20 0.21 1.3e+03 -1.0 0.2 8 12 567 571 566 571 0.83 17 20 0.00014 0.88 9.2 6.4 1 11 587 597 587 598 0.97 18 20 2 1.3e+04 -6.4 5.0 15 18 612 615 612 619 0.57 19 20 0.0009 5.7 6.6 18.1 3 18 628 644 627 645 0.87 20 20 9.2e-07 0.0058 16.1 12.0 1 16 686 700 686 705 0.91
Sequence Information
- Coding Sequence
- ATGTCACGAAAGTATCGAGATGCCGCTGCGTCATTGCAGCTAAGTGTTCAGAGACATCTGCAAGAATTTAGTGAACTCTCGTCTTCTGAAAATGATGAACCATACGATGCTAGTGTGCTCGAGGAAATTTTACAAAGATACTGCAAGGGTGGTGGCGATCGCCGTATGCTCAATAGGACCAAGAACATTCTAGAAGAAGCGCTTAGTGGTAATCCTATAACATGCCTCATATGTATAAGCTCTGTCAAACGAACAGATGCTATTTGGACCTGTGGGCATTGCTACTGCTATTTCCACCTCACCTGTGTGCAGAAATGGTCAATCGACAGCGTCACGCTTCGCAGTGACGAGAATGAGGGTCCTGTATCCATTGTGAAACCACAAAAAACCGAGTGGTGCTGCCCAAAGTGTAGATTCACTTACAACAAAACTGACATACCgcgaaaatattattgtttttgcggGAAAAACGATGATCCGACATTTCACCCTTGGTTAATACCACATAGCTGTGGGGAGATATGCGAGAAAAGGTTGTCAACGGGTGATAGCTGTAAACATAAGTGTCTGTTACTCTGCCATCCGGGCCCTTGTCCACCTTGCCCACAGACTGTCAATGGTACCTGTTACTGTGAGaaggaatttaaaaaagtaagatGCAGTGCAGCTAAATGGTCATGTAACCAAACATGCCAGAAAACATTACTTTGTAAAACTCATAAATGTGAAGATGTTTGCCATGAAGGAGAATGCCCACCTTGTCACTTCTCAAGCTCACAATCATGTAACTGTGGAGCTGAGATAACCCATAGACCTTGCAATGATCCACACTGGCAGTGTCAGCGACCGTGCCAGAAGTCATACCCTTGTGGCTATCATAAGTGTGAGAAAGTCTGCCATTCAGGGAATTGCGGGCCTTGTCCCAGCTCTGGAAATCAATCATGTCCATGTGGGGCAAATAAACGCTATGTAGAATGCCCTGATACCATCGAAACATGTCTTGgaacatgcaataaaaaacatgactGTGAACATACATGTCCAGAGAAATGTCATAAAGGCCCATGTCCACCGTGCCAGGTGTTAGTCCAAAAGAAATGCCAATGTGGAACACACCTCAGATCTCTGCCATGCAGTAAAGAATTCAGATGTGAAACAAAATGCAGAGGAACACGGCCCTGTAGAAAACACAGTTGTGGCCGGAAGTGCTGCAATGGTAACTGTCCACCATGTGAGAAAATATGCGATAAGCAACTCCAATGTGGTCGACATCGATGTACCAATATCTGCCATCTAGGTCCCTGTTATCCTTGCCCCCAAGAAATAAAAGTGCCATGTAACtgtaaaaaaactatcaaaaccGTTCCATGTGGTAGATACAAAATGATTAAACCACCACGATGCACACTTCCAtgtcatttaaaatacaaatgtgGACATGTAGATGAAAACAAACATTCCTGCCATTTTGGAGAGTGTCCCCCTTGCAAAGCAGTGTGCGgtaagaagtataataaatgtgAGCACTATTGCAAGACCACCTGCCATAAATATGTTTTAGTCGTATTTAGACAAGTCAAGAAACCTGCCACACCCTGGGAAGCACAACGgccaaaaacaaaaatcacgGCATTAGACTGTCCTCCATGTGAGACTCCGTTACAATTAATTTGCTTTGGTGAACATGAGACAGACACACAGGTATGTCATTCAGCAAAAAGAAGATCTTGTGGAAGAGAGTGCGGAAAACCTCTAACTTGTGGTAATCATAAATGTACATTGGAATGCCACCTTCTCCGTGAGGATCCTGCTTATAGAGATGTGCCATCTGTCTGCAAACCCTGTGACAAGCCTTGCTTAGTTTCTCGACCTGAGAAATGCACACACAAATGCCCAAAGGGTGCCTGTCACCCAGGTCCATGCCCTCCATGTGAGATTTTAGAAAGAGTTGCATGTCATTGCAATGTAACTGAATTATACATACGCTGCAGACAACTGTCTGTAGCTTCTGAAGATATTCTCTCTTGTAAGCAACAGTGCCCGAAGAGCTTGGTATGTGGACACCGTTGCAAAAACACATGTCATTCTGGTCCTTGCACCAATCAAATATGCACAAAGAAGACCAAAGCATATTGTGTATgtagaaacattaaaaaagagCTTCCTTGTAATTTGATTAGAGATGGTGAAGCAAAAATAGAATGTGATGAATCATGTGAAAAGAAAAAACTTGCTGCTAAACTTGAAAAAGAGATGGAAGAACAACGACAAAAGAAGTTAGAGGAAGAAAAGAACAGGAGAGAGCTAGCAGAATATGAATGGAAATTGAGTGGGAAAAAGAAAAACTACAAAGAGAAGAAGATTATCCCCAATAAAGATAACAGGAACATGTTACAAAAGAACTGGATTCCAATTATATCTGTTATAGTTGTGATGTTAgcattatgtatttattgtgtattgtataattaa
- Protein Sequence
- MSRKYRDAAASLQLSVQRHLQEFSELSSSENDEPYDASVLEEILQRYCKGGGDRRMLNRTKNILEEALSGNPITCLICISSVKRTDAIWTCGHCYCYFHLTCVQKWSIDSVTLRSDENEGPVSIVKPQKTEWCCPKCRFTYNKTDIPRKYYCFCGKNDDPTFHPWLIPHSCGEICEKRLSTGDSCKHKCLLLCHPGPCPPCPQTVNGTCYCEKEFKKVRCSAAKWSCNQTCQKTLLCKTHKCEDVCHEGECPPCHFSSSQSCNCGAEITHRPCNDPHWQCQRPCQKSYPCGYHKCEKVCHSGNCGPCPSSGNQSCPCGANKRYVECPDTIETCLGTCNKKHDCEHTCPEKCHKGPCPPCQVLVQKKCQCGTHLRSLPCSKEFRCETKCRGTRPCRKHSCGRKCCNGNCPPCEKICDKQLQCGRHRCTNICHLGPCYPCPQEIKVPCNCKKTIKTVPCGRYKMIKPPRCTLPCHLKYKCGHVDENKHSCHFGECPPCKAVCGKKYNKCEHYCKTTCHKYVLVVFRQVKKPATPWEAQRPKTKITALDCPPCETPLQLICFGEHETDTQVCHSAKRRSCGRECGKPLTCGNHKCTLECHLLREDPAYRDVPSVCKPCDKPCLVSRPEKCTHKCPKGACHPGPCPPCEILERVACHCNVTELYIRCRQLSVASEDILSCKQQCPKSLVCGHRCKNTCHSGPCTNQICTKKTKAYCVCRNIKKELPCNLIRDGEAKIECDESCEKKKLAAKLEKEMEEQRQKKLEEEKNRRELAEYEWKLSGKKKNYKEKKIIPNKDNRNMLQKNWIPIISVIVVMLALCIYCVLYN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00237152;
- 90% Identity
- iTF_00237152;
- 80% Identity
- -