Bman008646.1
Basic Information
- Insect
- Bombyx mandarina
- Gene Symbol
- -
- Assembly
- GCA_003987935.1
- Location
- NW:2963238-2972079[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00029 0.013 15.4 2.0 1 23 574 596 574 596 0.97 2 11 0.014 0.63 10.1 1.7 2 23 690 712 689 712 0.95 3 11 0.015 0.67 10.0 0.3 1 23 716 738 716 738 0.98 4 11 0.0048 0.22 11.6 0.6 2 23 760 782 759 782 0.94 5 11 1.3 57 4.0 0.1 1 23 786 809 786 809 0.96 6 11 0.019 0.85 9.7 0.2 2 23 832 854 831 854 0.92 7 11 0.00016 0.0073 16.2 3.1 2 23 865 886 864 887 0.95 8 11 0.0014 0.065 13.2 1.2 2 23 902 923 901 923 0.96 9 11 0.0097 0.44 10.6 0.8 1 23 929 951 929 951 0.96 10 11 0.36 16 5.7 3.0 1 23 957 981 957 981 0.92 11 11 0.052 2.4 8.3 0.3 3 23 1035 1055 1034 1055 0.98
Sequence Information
- Coding Sequence
- ATGACTTCAGAAGAACACTTTCCAGTCAAAATGAAAGACGCGATCAGCATAAATCTAGAAAATGaagaattacatttaaaaacgaaaCTGGAAGTCAATAATTATGCTACTAGTGAAGGTCAAACTTCAGTAgcatttcaacaaaataatgttcaagATATACGCATCCAATGTAATGAACAATCTGTCCAAAACAATCACCCTCAGGTAGACTGTAATGAGACAAACGATCATGGAAGAATTAATAATATTGCCGATAATCAGACTTCGATCGAAATTAAAGATAGCTCaaatatagaagaagaaaatatagaagATCAATCAATAAACCTTAGTAATTATGATAATCCCGAgacaaaaacacaaataacagATGTACTAGTTGCGAACCAAGATGAAAATGCATCTCAAAACAAAGATTTGagtaaaatcaatataaaatcgTATATAGAATTAGAAGGAAACACGATTGGTTTACTAAAACAAGAAGAAATACCGGCGTGTGTGATTGAAGCGTGCGAGGAATTAAAAATGAACGAAATATCAACTGACGATACTGAGAGCAATAATGTAGATGACGAAATAGTCACTGACGGTCCAGAAACGGATCAAATCGTTAATCGAACGACAGAAGACGTTACACCAATAAACACCTACACGCGGCACGAAGAGCTAAACCAAAAACTCAGCATCAAAGTCGAAGGCGGTCAAAGTGAGATGAGCGTGAACGCTGGCACTAGAGCTGATGAAGCTGATCTGCGTGAAGCCAACGTCGACAATGTCAGTAATGCCGACGCCACAGACGCCGGAATAAATGTGAAGACAGAACATTTCACATACGGCGATTTCAATAAGGACTGCCCAAAGAGTCAACTAGTTATAAAACAAGAATATGACGATATATATTCCGAGGGTGTTTCTCAAAGCAGTGATTGCTCTATAAAGATTTTGTCGGTTGGTACTTTGAAAGATGAACTAAAGCGCCAAGAATGCGGGATTCCAGATTACAGTGACGCAGTCAAACTGGAGGCTACCGGAGATGACTTCACTTCGTTCGATTATCCTAATTACGATGACAGCATGGACAGCAATGAGGCCGCAGCTTTTTGTAGAGTCGAAACTTGTCTCCAAGAAGACGGACAGAGGATCGAACGTAATCAGATCTATGATGATAAACAAGACTTGTATAGAGTAATCAAGGAGGAGGAACACTTGACGGTGACCGACACACATATAATTTCCAACAAGCTCACCAACACGTCATTGTACGCAAACCCCTATGATGTGctgataaaaagtaaaaaaggatTAGTCATGGAAATACGACCGATGTCCGGGCGAAATTTCGGTATGAAATCCGGCAACCCAGAAGAGATATTGCCAACAATCGACAACTACGACGATTACGAAGCTTTCCAATTGAATTCGATCACCGGAGACGTTGCGTCTCTCGAGCAAGAAGCCTACGGCCTCCTGAAANCAAACCCCTATGATGTGctgataaaaagtaaaaaaggatTAGTCATGGAAATACGACCGATGTCCGGGCGAAATTTCGGTATGAAATCCGGCAACCCAGAAGAGATATTGCCAACAATCGACAACTACGACGATTACGAAGCTTTCCAATTGAATTCGATCACCGGAGACGTTGCGTCTCTCGAGCAAGAAGCCTACGGTCTCCTGAAAGCTAAAACGAAGACGACACGCAGAAAAAAGCACGTTTGTCCGAAGTGCGGTAATGCCTACGCATCAGAAACATGCCTGAAGAGGCACCTCAAAGTCCACGACACTATTGAGAAGCAAACGAAAACTTCGGTGAAGAGACAAAAGGCTAAAATCGATAATCAGAGTAAAAAAGTCGATTCGCTGAAATCGAGTATCcgcaagaagaagaaaaacgcTGTCAATGAAACTAAAGTGGAAAAAATCGACATAGAACCAATCGCGGAGAAGAAGACGGACAAAGAAGGCTACGTGTGCATCTGCGGCGACGTTTTCCGGCGCAGGATTCGTATGGAGACCTGCATGAGGTCGCACAACACGGACCCCGACGTGAGTCACGTCAAGTGCACGACTTGCTCGAAGAACTTCAATAGCAAAGAGGAGTTGGCCTTCCACAGGAAACGAGTCCACAGGAAGCGGTTTCCTTGCAAGTTCTGCCCCACGGACTACGACACCGGGAAGGACCTATTCGAACACCTGAAAATCCACCGGCAAGTCCAATTGACCGAGTTCAAGGTTATATCGGAGATGGTCAACGGTAAGGAGATATTAAAGTGTTTTATGTGCAATAACTCTTTTAAGGAGCTACCTCAGCTGAAGCGTCACGTGATGGAAGATCACGTAGAGCCCTACTCGTGTAGGTACTGCAGAGCGGCGATCCCTAATATTATCGACTTCGCGAACCATATTAAATCGTTTCATCCCGAAGTCGAAGGTCAGTCACTCCTGGACGTTCTCGAGGCCTTCTCCAAATTGGTGCAAGCTTGGAAATGTGAGGAATGCGGCATGCAGTTCCACGAAGCAGATAAACTGGCCCTGCATCAGGCGGAGACTCACAACCCAGACTTAAGAGAGCAACTTCAGATACAATGTGAAGATTGCCGGAGAGTGTTCGTTAGTCACAAGGGCCTACAGTCTCACAGGAGAGTGCATCACAGCGTCGAAGTCGAGTCCGCGCCGCCTGAGGAGGCCGGGGTCATGTGTGTGGAGTGCCGCAAGATGTGCAAGGACATGGAGGCGCTGACGTCTCACATGAGGCTGCACTCGCCCGAGAGGAAATTCCCCTGCAAGTTCTGTGATTTCCGCTTCGCCACCGCGGAAAAGAGGAGAGTCCACCAGGAGCTACACACTGGCGACATGAAGTACGTCTGCTTTATATGCGAGTACCAGTGCACGTCGGAGAACCGGTTGAAACTGCACAAACGATCAGCCAAACACCAGAGCATGAAGGAGTACCTGCTGTCTGGGGCCTCGCTGACCGAAGAGAAGCCCGCAGCGAGCGAAGAAAGGAAAAACAAGAAAGAGACAAGATTCAAAAAGAGGAAGAAAGAAAGAGACAGAAGCGCGAACAGTGGGTCCTCTGTGAGCTCCGTGCTGTGCGATGTGTGTGGTGACAAGTTTCCTAGCAAGAGCCTGATGCTGGAACACAAACAGTCGCATCCCTTCATAGAGTTCCCCAACGAAGACAAACCCACTAGGATATTCTTCAAATATCACTAA
- Protein Sequence
- MTSEEHFPVKMKDAISINLENEELHLKTKLEVNNYATSEGQTSVAFQQNNVQDIRIQCNEQSVQNNHPQVDCNETNDHGRINNIADNQTSIEIKDSSNIEEENIEDQSINLSNYDNPETKTQITDVLVANQDENASQNKDLSKINIKSYIELEGNTIGLLKQEEIPACVIEACEELKMNEISTDDTESNNVDDEIVTDGPETDQIVNRTTEDVTPINTYTRHEELNQKLSIKVEGGQSEMSVNAGTRADEADLREANVDNVSNADATDAGINVKTEHFTYGDFNKDCPKSQLVIKQEYDDIYSEGVSQSSDCSIKILSVGTLKDELKRQECGIPDYSDAVKLEATGDDFTSFDYPNYDDSMDSNEAAAFCRVETCLQEDGQRIERNQIYDDKQDLYRVIKEEEHLTVTDTHIISNKLTNTSLYANPYDVLIKSKKGLVMEIRPMSGRNFGMKSGNPEEILPTIDNYDDYEAFQLNSITGDVASLEQEAYGLLKXNPYDVLIKSKKGLVMEIRPMSGRNFGMKSGNPEEILPTIDNYDDYEAFQLNSITGDVASLEQEAYGLLKAKTKTTRRKKHVCPKCGNAYASETCLKRHLKVHDTIEKQTKTSVKRQKAKIDNQSKKVDSLKSSIRKKKKNAVNETKVEKIDIEPIAEKKTDKEGYVCICGDVFRRRIRMETCMRSHNTDPDVSHVKCTTCSKNFNSKEELAFHRKRVHRKRFPCKFCPTDYDTGKDLFEHLKIHRQVQLTEFKVISEMVNGKEILKCFMCNNSFKELPQLKRHVMEDHVEPYSCRYCRAAIPNIIDFANHIKSFHPEVEGQSLLDVLEAFSKLVQAWKCEECGMQFHEADKLALHQAETHNPDLREQLQIQCEDCRRVFVSHKGLQSHRRVHHSVEVESAPPEEAGVMCVECRKMCKDMEALTSHMRLHSPERKFPCKFCDFRFATAEKRRVHQELHTGDMKYVCFICEYQCTSENRLKLHKRSAKHQSMKEYLLSGASLTEEKPAASEERKNKKETRFKKRKKERDRSANSGSSVSSVLCDVCGDKFPSKSLMLEHKQSHPFIEFPNEDKPTRIFFKYH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -