Basic Information

Insect: Bombyx mandarina
Gene Symbol: -
Assembly: GCA_003987935.1
Location: NW:5104360-5120340[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.019 0.84 9.7 1.2 2 23 293 315 293 315 0.95

2 8 0.00015 0.0068 16.3 0.4 1 22 367 388 367 392 0.94

3 8 0.002 0.092 12.8 0.2 2 23 409 431 408 431 0.96

4 8 1.6 75 3.6 3.1 3 23 444 465 442 465 0.85

5 8 0.00016 0.0072 16.2 0.4 3 23 480 500 479 500 0.96

6 8 1e-05 0.00045 20.0 0.4 2 23 506 527 505 527 0.97

7 8 2.4e-06 0.00011 22.0 2.5 1 23 533 555 533 555 0.98

8 8 0.005 0.23 11.5 4.4 1 23 561 584 561 584 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.019	0.84	9.7	1.2	2	23	293	315	293	315	0.95
2	8	0.00015	0.0068	16.3	0.4	1	22	367	388	367	392	0.94
3	8	0.002	0.092	12.8	0.2	2	23	409	431	408	431	0.96
4	8	1.6	75	3.6	3.1	3	23	444	465	442	465	0.85
5	8	0.00016	0.0072	16.2	0.4	3	23	480	500	479	500	0.96
6	8	1e-05	0.00045	20.0	0.4	2	23	506	527	505	527	0.97
7	8	2.4e-06	0.00011	22.0	2.5	1	23	533	555	533	555	0.98
8	8	0.005	0.23	11.5	4.4	1	23	561	584	561	584	0.98

Sequence Information

Coding Sequence: atggtttgcTATTGTTGTGTGAAAGGATGTACTAATAATAGCAAAATGAAGAAGAAAGACCCGAATTCGAACATAACATTCCATgcGTTCCCAACAAATTCATTAATGAAGGCTAAATGGGTGAAAGCGATTGGCCGTTCTAATTGGGATCCACCGGCCTATGCACGTATCTGCAGTATACACTTTGATCGCGACTATGTCAATTACGAGAACTGTAGAACTAGAATCAAGGATGATGCTATACCTGTTCTAAATTTACCTTTGAGCTCTAATTTTGATGCTTCTGAGGTAAAAGTCTGTAGAATATGTCTGGCAAATGATGTTAAAATGTACAGTACTCAAGAAGGAAGATTAAAGTCTTATATGGAACAAATATTAGTGTTAAGGGAAAAATTACAAACAGATGGACTTCCACAGTTTGTGTGTTACATGTGTGCAGCTGAGGTTGGCAAGTGTTGCAAACTTATTGAGAAGAGTGTTGTAGCTCAGGCAACATTGCTAGATGTATTTGCGCGAAATGGAATGgtAACTAAAGATCTAATACGAAGAATCAATAGAAAACAGTTAAACTTGTGTTCATCATTATCTACAAACAATCAAACACATTATTATGTAGAACACGGTTctaaaaaccaacaaaatagATCATCAatgaaatttgattttgaatgCAAAAATggagaaataaatgtaaaattagaAAATCATTTGGATGCTATGGTTGAAAATTCAAAGAATTATGATACATCTGATATTATTGATGGAGGGATGAGATACAATGATAGAGATAATATTTCGGTTGGATCTGATTGTAGTGACGATAAATCATTAAGTTTATTGAAGAAAACTAAGAGTCTAAAGAGTCGTGACAAAGCAGAGTGTCCCATATGTAAGCTTCGTTTCAAGAGTGAAGCTTCCGTAGATTTGCACAGGCGACACACGCACAAGAAGAAGTTCCAGTATAAAAGCTGCCCTAAAACACTTAGTGATGCTGTTTTAACCGGAGAAGACAAGAAGAAACGTTCGAAACAGCCCGTAAACAATGAGCGCGCGTTAAATGGCCACAGAGACTTGTCGGAACCAAAACGTCTGGGAACATATCGATGCGATAATTGCAATGTCAAGTTTGTATCGAAGGGCGCGCTTCGAGTTCACCTACTCACTTCAAGTCGACATAGTAGTAAAGTTACAAGCTCGGCCCCCTCCGATTCGAATACGAATAAAACGTGCAAGATCTGTCTAAAGGAGTACGAACTGCCGTCCGAACTGCTCCGGCACGTGCTGACCGATCACCGCAAGAGACGACTCAAAGAAACGTATCCCACGAATTGTGAACACTGCAACAAAATGGTTAGTAGCCGTCGGGAACATTGGTGGCATACGTATAAGGAACATCCGGAAGAGAAGGACTCGTATAGACGCGTCATCGCCGCCATCTGTGACGTCTGCGGTAAGGGATTCCAGAATAAAACGAAGTTACGTATCCACGAGCTACGTCACGCGTCTCCGTCGGTGCGGTGCGACGTGTGCGGGCGCGCGTTCTACGACAAGTACGCACTGGCGcggcacgcacacacgcacacgcggGCGCGTCCGTTCGTGTGCACGCACTGCGGACAGACCTTCACGCTGCGCACCAACCTCAACCGCCACGCCAAGGTGCACTCGAATGTGGCAGCATACCAGTGTCCCATGTGCTGCAAGAAGTTCAAGTATTCGACCAGCCGAAACTTACACATCCGCACCGTACACTACAAGCTGCCTACTCCGCCTCGTAAAAAGCGGACCAAAACTTCAGactaa
Protein Sequence: MVCYCCVKGCTNNSKMKKKDPNSNITFHAFPTNSLMKAKWVKAIGRSNWDPPAYARICSIHFDRDYVNYENCRTRIKDDAIPVLNLPLSSNFDASEVKVCRICLANDVKMYSTQEGRLKSYMEQILVLREKLQTDGLPQFVCYMCAAEVGKCCKLIEKSVVAQATLLDVFARNGMVTKDLIRRINRKQLNLCSSLSTNNQTHYYVEHGSKNQQNRSSMKFDFECKNGEINVKLENHLDAMVENSKNYDTSDIIDGGMRYNDRDNISVGSDCSDDKSLSLLKKTKSLKSRDKAECPICKLRFKSEASVDLHRRHTHKKKFQYKSCPKTLSDAVLTGEDKKKRSKQPVNNERALNGHRDLSEPKRLGTYRCDNCNVKFVSKGALRVHLLTSSRHSSKVTSSAPSDSNTNKTCKICLKEYELPSELLRHVLTDHRKRRLKETYPTNCEHCNKMVSSRREHWWHTYKEHPEEKDSYRRVIAAICDVCGKGFQNKTKLRIHELRHASPSVRCDVCGRAFYDKYALARHAHTHTRARPFVCTHCGQTFTLRTNLNRHAKVHSNVAAYQCPMCCKKFKYSTSRNLHIRTVHYKLPTPPRKKRTKTSD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00236687;
90% Identity: iTF_00235915; iTF_00236922; iTF_00236687;
80% Identity: iTF_00235915;