Bman009730.1
Basic Information
- Insect
- Bombyx mandarina
- Gene Symbol
- -
- Assembly
- GCA_003987935.1
- Location
- NW:2427512-2443831[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00027 0.012 15.5 0.7 1 23 333 355 333 355 0.98 2 11 0.004 0.18 11.8 6.0 1 23 362 384 362 385 0.95 3 11 0.36 16 5.7 2.2 1 23 389 411 389 411 0.97 4 11 0.0015 0.068 13.2 1.5 1 23 416 439 416 439 0.98 5 11 0.0063 0.29 11.2 0.9 1 23 443 466 443 466 0.93 6 11 0.0058 0.26 11.3 0.1 2 21 479 498 479 503 0.92 7 11 0.081 3.7 7.7 0.5 2 23 542 564 541 564 0.96 8 11 0.0022 0.099 12.7 0.5 2 20 580 598 579 601 0.92 9 11 2.1e-05 0.00097 19.0 2.4 1 23 607 629 607 629 0.99 10 11 3.6e-05 0.0017 18.3 2.1 3 23 638 658 636 658 0.96 11 11 7.9e-05 0.0036 17.2 1.9 1 23 664 687 664 687 0.95
Sequence Information
- Coding Sequence
- ATGAGATGCTGTGTCACCGGTTGTAAGAATGACTCTAGGAATTTATCTAAATCTCAAGGAATCACTTTTCATGTGTTTCCGAGTGAGCCGTCTCTACGTGCAGCTTGGCTTCAGGTGTTATGTAAAGATGGATGGGAGCCTAAGGAGAGGAGTGCAGTGTGTTCAAAACACTTCCTAGCTGAAGACCTATATGAGACTCAGAGTGGTCTGCGTAAGGTCAAAGCTGGAGCAGTACCATTTTTTGAAACAACAATGAGCTGCACATTCCGCGGTACTGAGACTTTAAAGGCGTGTCGAATATGCCTATTGACATGCGGGAGGTTCTACTCCTTACAAACTGAAGATCTGAGGCAGGCCTATGAGAACCTAACGGGGATACAGGTGACGGAAGATGACGGTCTGCCTGTCCACCTGTGTCCAGAGTGCTCGGTGCGGCTGCTAAACGGAGACAGGTTCAGAAGGAGGGCGCTCCGGGCCAACTCGCTCCTGCTAGGGGTGCTTCGGAGTGACTATGTGCTGACCACAGACTCGATTAATAGGATAGACAGAGCCGCGGAGAAGCTAACCTCGAACCTGACTTGTGACGTAACGCATTGTGACGCGGACCCCGGGCTCGCCGCCCCCAGCTGCCGGGTCTACCTGCAGGACGACGCCGAGCTGGAGCCGGAGGAAACCAAGTACGACGTGCAGGGTGGTGACGTCACAGCTGACGTAGACACCCAGGAATACGTGATTGTGAAGAGCGATCAGGTCGACGACGGGTTCTCGTCCGACGACAACCTGCCCTTGGAGGCCGCTAAGCTGAAGGTGAAACAGGAGAAGGTGAAGAAGAAGCCGAAGAAAGAGTCGAAGGAGCCGAAGGTGGACCGCAGGAGGAAGCCGTTCATGAACGCCGAGCTGAGCGACACGCTGTTCACGACCACGCAGCTCAGCGTCGAGGAGCAGGTCGCCGAGATACACAAGCGCAAGGAGGGCTCCAACTACCGCAACGGCGTCTTCAAGTGCGACGAGTGCTTCAAGGGGTTCCAGGACGCGGACGCGTACAGCAGCCACATGACGCGACACACAGACCAATGCGGCGACCACCAGTGCCTGGTCTGCCGGATCTACTTCAGGAACCAGCACGCGCTTCGGAAGCACATGACCGCGCACCACTCGAGCCGGTTCAGCTGCAAGCAGTGCCCCTTCGTCACCAACCACCGGCAGACGGCGCGCCTGCACGAGCGCTGGCACTGCGGCACCAAGTACCGCTGCCCGCACTGCCCCGAGGAGTTCGTTAAGTTCACAACCTACATGGGTCACCTTCGGATCAAGCACCCGTCGGACTTCGTCTGCGAACTCTGCGGCTACTGCTTCGTCAGCGCCAAGGGGATAATGCTGCACAAGCAGCTGAAGCACAGGCTGGAGGACGGCAAGGTGCCGGAGAAGGGTCCGTACTGCGAGCAGTGCGACGTGCGCTTCGTGTCCCCGGACGCTTACGACCGCCACATGATCGTCTCCGCCAAGCACAGCACAGATACGAAGCGCGCCGCCAACAAGGCGAAGAGCCGGCGGCCGAACGACGCGGCCCCGCGCGCCCGCcgcccgccccccgcgcccggCGCCAGGCCCGACGGACCCATACCCTGCGAACAGTGCGGCCTCCAGCTGGACGACCCGCGGGCCTACCACAAGCACTTCAGGCGGATGCACCCGGACAAGAACCGGACCAACTACCCGTCGATGAAGACGCCGTGCATGTGCGAGGTGTGCGGGCGGATGTTCCAGAGCCAGGCGCTGCTGAACGACCACCGCTGGGTGCACACCGGCGAGAAGCCGTTCAAGTGCGAGGTCTGCGACAAGACGTTCCGCATGCGGCAGCGGCTCATGACGCACCGCCGCGTGCACAGCCGCGACCGCGCCAGCTACGGCTGCGCGCTCTGCGGGAAGCACTTCTCCTCGCAGAGCAACAGGCAGAGGCACATGTTCATCCACACCGGCCTCAAGCCGTACAAGTGCGAGATGTGCGGCAAGGGCTTCAAGCACACGAGCGAGAAGCGCGCCCACATCACGTACGTGCACCTCAAGAAGCCCTGGCCGAAGCGCAGCCGGAGCAAGCGGCGGACGGACAACAGGACCGCCACACTGCAAGCTACGGACCCCCCGGAACTGGACATGGGGCAGCCGATATGGCCGAATTGCGAACAAaaactaaatgaaatgaatcTAATCGAAGACAAacctatgtattataatattaaaatataa
- Protein Sequence
- MRCCVTGCKNDSRNLSKSQGITFHVFPSEPSLRAAWLQVLCKDGWEPKERSAVCSKHFLAEDLYETQSGLRKVKAGAVPFFETTMSCTFRGTETLKACRICLLTCGRFYSLQTEDLRQAYENLTGIQVTEDDGLPVHLCPECSVRLLNGDRFRRRALRANSLLLGVLRSDYVLTTDSINRIDRAAEKLTSNLTCDVTHCDADPGLAAPSCRVYLQDDAELEPEETKYDVQGGDVTADVDTQEYVIVKSDQVDDGFSSDDNLPLEAAKLKVKQEKVKKKPKKESKEPKVDRRRKPFMNAELSDTLFTTTQLSVEEQVAEIHKRKEGSNYRNGVFKCDECFKGFQDADAYSSHMTRHTDQCGDHQCLVCRIYFRNQHALRKHMTAHHSSRFSCKQCPFVTNHRQTARLHERWHCGTKYRCPHCPEEFVKFTTYMGHLRIKHPSDFVCELCGYCFVSAKGIMLHKQLKHRLEDGKVPEKGPYCEQCDVRFVSPDAYDRHMIVSAKHSTDTKRAANKAKSRRPNDAAPRARRPPPAPGARPDGPIPCEQCGLQLDDPRAYHKHFRRMHPDKNRTNYPSMKTPCMCEVCGRMFQSQALLNDHRWVHTGEKPFKCEVCDKTFRMRQRLMTHRRVHSRDRASYGCALCGKHFSSQSNRQRHMFIHTGLKPYKCEMCGKGFKHTSEKRAHITYVHLKKPWPKRSRSKRRTDNRTATLQATDPPELDMGQPIWPNCEQKLNEMNLIEDKPMYYNIKI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00235921;
- 90% Identity
- iTF_00235921;
- 80% Identity
- iTF_00235921;