Bman010450.1
Basic Information
- Insect
- Bombyx mandarina
- Gene Symbol
- ZNF526
- Assembly
- GCA_003987935.1
- Location
- NW:5639891-5649798[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0085 0.39 10.8 3.1 1 23 190 213 190 213 0.96 2 11 0.011 0.49 10.5 0.1 1 23 219 241 219 241 0.97 3 11 0.35 16 5.7 1.1 1 23 245 267 245 267 0.89 4 11 0.0058 0.26 11.3 2.6 2 23 272 294 271 294 0.96 5 11 0.004 0.18 11.8 7.7 1 23 297 320 297 320 0.98 6 11 0.016 0.74 9.9 4.7 2 23 324 346 323 346 0.94 7 11 0.0011 0.049 13.6 1.3 3 21 354 372 353 376 0.90 8 11 9.3e-05 0.0042 17.0 0.1 2 23 385 407 384 407 0.91 9 11 0.0034 0.15 12.1 0.7 2 23 414 436 414 436 0.96 10 11 0.0037 0.17 11.9 0.2 3 23 447 467 446 467 0.97 11 11 3.7e-05 0.0017 18.2 0.2 1 23 473 496 473 496 0.98
Sequence Information
- Coding Sequence
- ATGGAATTTGAAgtaaaaagtgaaataaacaatgaGGTTCTTCTATGCCGCACTTGTTTGAATGGGGAACAGAAGTTGAAACCATTAGGGCAATTATCTGCTATTTTTCGAAAATTATTTTCGGATTGCGaaGGCTTATTCGACTTGGAAATGATTGAAATATGTTTGGAATGCGAAGCCATGCTGAAAAGGATTGATGATTTTTACATTCGCGTGCAAAGAGCTATCGGACTATTGTTGAGTGGAACGAAATTCAAGAGTAGCTCTCTCTCGTCCCCAGAAACAACGAAGCAATGCGTGCAAACAGAATGTGTAGAGATAAAAAGCGAATTTAACAAAGAAGCTTCTGTAGTTTTAGATGCagaagaaattgaaaataaaaagcaGAGAATGAAAAAGCAGAGTAACTGGGCGAGAAGACGAGCCTTATTAAACAAAAAGcccaaatatgtaataataaaattacaagagAACACAATGTTTAAGAAGAAGAGATTCAACAACGTTGACGAATTGAATTCATTTCTGAATACCCACAGATGCAGTGATCTTTTTAAAGGGAAAGAGTTCAAATGTGAATCTTGCGTgtactttttcaaaaataataggTTACTGGAGAGTCATAACAAGAGATATCACAATAAGAGATTGTCATACATCTGTGATATCTGCGAGTCGAATTTTCCCGACAAGCTTCGCCTGAAGATGCACATCGCCAGCCATTTTGACGTTTACGAATGTCAGTATTGCGGACAGATATGTCAGGGTGACAGCTCGAAAGGTAGACACGTCAGGGAGCACGGCGCAGTGTTGCAGTGCTTGAAATGCGACGCTAAATTTAGtgaACGTCGTGACTTTTACGCGCACCACAGACGGCTCCACGAGAGCTTCGTCTGTCATCACTGCGGAGTGTCCTTCAAAATGAGGTACTGCATCAAAGATCATTTGAGAAGGAGACACGCCCCGAAGAAGTGCACGTGCTGTAATAAGACATTCGCCCGTTACAAGTCGCTGTGGATGCACACGAGGCTGTCGCACGCATCCGCCGTGCCCGCTTACTGCGTGGAGTGCGACAAGCACTTCACCGACGTGTACAAATACAGAAGACACTTGAACGGCCCGAAACATAAGCCGGGGAAGAAGCGGAGGATCCCATGTCCGAATTGTGGAAAGGTCTTCAGTAAAAACATATACATGAAGAACCATTACGATTTGGTTCATTTGAAGAAGATTCACAACAGATGTGAAGAGTGCGACAAGAACTACTTAAGGAAGGCGGATCTGTTGAAGCACAAGCTGAGGATCCACGAAGGGGTCTCGCCGCCTCGGAATAAGATCTGCGGCGTCTGCAGTAGGGGGTTCACGACGAATAGAATACTCGCGAATCATGTCCGCACGCACACAGGCGAACGTCCGTATTCGTGTGCGGTCTGCGCCGCCACTTTCACGCAGAACTCTGCGCTGTCAACTCACATTCGATCGAAGCATAGAGACGTGTGA
- Protein Sequence
- MEFEVKSEINNEVLLCRTCLNGEQKLKPLGQLSAIFRKLFSDCEGLFDLEMIEICLECEAMLKRIDDFYIRVQRAIGLLLSGTKFKSSSLSSPETTKQCVQTECVEIKSEFNKEASVVLDAEEIENKKQRMKKQSNWARRRALLNKKPKYVIIKLQENTMFKKKRFNNVDELNSFLNTHRCSDLFKGKEFKCESCVYFFKNNRLLESHNKRYHNKRLSYICDICESNFPDKLRLKMHIASHFDVYECQYCGQICQGDSSKGRHVREHGAVLQCLKCDAKFSERRDFYAHHRRLHESFVCHHCGVSFKMRYCIKDHLRRRHAPKKCTCCNKTFARYKSLWMHTRLSHASAVPAYCVECDKHFTDVYKYRRHLNGPKHKPGKKRRIPCPNCGKVFSKNIYMKNHYDLVHLKKIHNRCEECDKNYLRKADLLKHKLRIHEGVSPPRNKICGVCSRGFTTNRILANHVRTHTGERPYSCAVCAATFTQNSALSTHIRSKHRDV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -