Basic Information

Insect: Bombyx mandarina
Gene Symbol: -
Assembly: GCA_003987935.1
Location: NW:1457656-1468142[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.0045 0.2 11.7 3.8 1 23 354 376 354 376 0.98

2 8 3.3e-05 0.0015 18.4 3.7 1 23 420 443 420 443 0.97

3 8 1.5e-05 0.0007 19.4 5.8 1 23 458 480 458 480 0.98

4 8 1.4e-05 0.00064 19.6 1.3 1 23 485 507 485 507 0.98

5 8 3e-06 0.00014 21.7 2.8 1 23 516 538 516 538 0.98

6 8 9e-05 0.0041 17.0 0.8 1 23 544 567 544 567 0.98

7 8 0.028 1.3 9.2 1.8 1 11 573 583 573 586 0.89

8 8 0.018 0.8 9.8 4.6 1 23 604 627 604 627 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.0045	0.2	11.7	3.8	1	23	354	376	354	376	0.98
2	8	3.3e-05	0.0015	18.4	3.7	1	23	420	443	420	443	0.97
3	8	1.5e-05	0.0007	19.4	5.8	1	23	458	480	458	480	0.98
4	8	1.4e-05	0.00064	19.6	1.3	1	23	485	507	485	507	0.98
5	8	3e-06	0.00014	21.7	2.8	1	23	516	538	516	538	0.98
6	8	9e-05	0.0041	17.0	0.8	1	23	544	567	544	567	0.98
7	8	0.028	1.3	9.2	1.8	1	11	573	583	573	586	0.89
8	8	0.018	0.8	9.8	4.6	1	23	604	627	604	627	0.95

Sequence Information

Coding Sequence: ATGTTACACAACAATGGGCCTTTTGGCCCGAATGAAGCATCAGTGAATATGAACACTCAAGTTAACATGACGTTCAATAATAGTGTAAATTACGTGAATAACTTGAATAAAATCACCCAGGAAACCGAACAAACACCGGGTGTGGCATACAACTTCCCCAATTACGGTTTCGGACCTCCAGGATTAAGCATGAACCCACAAATTCCACGTTATCCAACATATCACCTTGATAATATGCACTCCGCTTTTACGACTCACAGATCGCAAAAGTTCGACCCAATGCCGTGGAGCAGTAGTCTAATGCCTACCAACTTTAATCTACAGCACGGAGAGCCCCAGAAAATAATGGGTTATCACCAAACTTACGACGCAATCTCTCCTCACCCATTGTCCAGTACTGATACATATCACAGAAACCTACATTATAATGTACCACATCCGCAACCTTTAGACTACGCAACCTATGGATCGCACGACTCTAGAATAGACCACAACTCACAAGATAATATAACAGTGAATAAAACCACTACACTAAACGAAACAAAACGTAAAAGTCTCGAAAACACCGTAagattaatagaaaatatattaagtaatgCGTCTAATAAGAATACGGAGGAACTTGACTCGCCTCGGTCAAACATCCAAAACGAAACTGAAGACAGTCAAACAAACCAAAATGTGACCAGTACAACTGAAAAAACTACAGACATATCAAGTGACGAGATGAAAAGCAACGATAACCAAATACAGAGCTCTGAAAACACACAGGATTCCTTCAATTTTGATGAAAGTTCTAAAGGTGAATCACAAAATTCTGATGACAAGTGCAATATAGACGATGGAGACGGTGAAGATTCGCTCAGCAACATTGAAGTTAAAGTTGAAATGACATGCGGAGAGACAGAGTATATTAATCCATATTTGAAAGACCCAAATGGAGTTCAGAAAGATGGTTTAAATGGAACATTTGTGTCAGCAGAGAATAGCATTCGTGAGGCTATTGAAGCAGTAAGAGCTACTAAATGTGTGATCACGGGAACTGTGGTGAATTTAAGTTATGAATGCCCACATTGTAGCCTCATGTTTTGTAATCCGAAACGTTTCCTCATACACACAAAGTGGCATACCTTGGGCTTCAATAAGAAGACGGAGAGGGCTAAGCGAAGAGAGATTAGGCGGAACGAGAAGAGAGAGGCTAGGATGATGGAGAAAATGAATGAGGTGAAAGAGGAGCCAGTAGGAAACGGTCAGACCTTTTCTTGCAAGGACTGCGATAGAGTATTCATAACGAAGAGTCGACTGCGCTACCACAGGCACACTGTTCACTCGACCCGTCGTCGCGTGAAGGTGCAGGAAGAAGGAGCGCCCTTCCAGTGCACCGACTGCCCGAAGCAGTTCAAGCACAGACATTCCCTGGAGAAGCACAGGGCTTCGCACATGGAGAAAATCCACGAGTGTCCCGATTGTCCAAAGAAGTTCGGTTCGGTGTCGCAACTGAAGATGCACTCGAAGACTCACGAGCGGATCACGCGGGGACACACCTTCCACTGCACCTACTGCGGGAAGGGGTTCTACGAGAGCTACAACCTACAGGTCCACGAGAGGACGCACCGCAACGAGCGTCCGTACGTGTGCGACATCTGCACCAGCACCTTCCTCACCAACTCCAGCCTCAAGCGACACCTGCGGGTCTCGCACAGCAGCGCGAAGCCCTACGAGTGCAAGCACTGCCACAAGAGCTTCGCCAAGGAGAAGATCcgggactcacacgaggtccgcGTGCACGGCGACCCGGAGTCCTTTCGCTTCCACTGCCCCCAGTGTCAGAACAAGTACACAACGTTCAAAGATCTCCAGAAGCACACGTACAAAGCGCATCCTAAAGGTAAGAGACGCAAGCGGAGACAGGATCTCGACGACTAG
Protein Sequence: MLHNNGPFGPNEASVNMNTQVNMTFNNSVNYVNNLNKITQETEQTPGVAYNFPNYGFGPPGLSMNPQIPRYPTYHLDNMHSAFTTHRSQKFDPMPWSSSLMPTNFNLQHGEPQKIMGYHQTYDAISPHPLSSTDTYHRNLHYNVPHPQPLDYATYGSHDSRIDHNSQDNITVNKTTTLNETKRKSLENTVRLIENILSNASNKNTEELDSPRSNIQNETEDSQTNQNVTSTTEKTTDISSDEMKSNDNQIQSSENTQDSFNFDESSKGESQNSDDKCNIDDGDGEDSLSNIEVKVEMTCGETEYINPYLKDPNGVQKDGLNGTFVSAENSIREAIEAVRATKCVITGTVVNLSYECPHCSLMFCNPKRFLIHTKWHTLGFNKKTERAKRREIRRNEKREARMMEKMNEVKEEPVGNGQTFSCKDCDRVFITKSRLRYHRHTVHSTRRRVKVQEEGAPFQCTDCPKQFKHRHSLEKHRASHMEKIHECPDCPKKFGSVSQLKMHSKTHERITRGHTFHCTYCGKGFYESYNLQVHERTHRNERPYVCDICTSTFLTNSSLKRHLRVSHSSAKPYECKHCHKSFAKEKIRDSHEVRVHGDPESFRFHCPQCQNKYTTFKDLQKHTYKAHPKGKRRKRRQDLDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00236939;
90% Identity: iTF_00236939;
80% Identity: iTF_00236939;