Basic Information

Insect: Bombyx mandarina
Gene Symbol: -
Assembly: GCA_003987935.1
Location: NW:1792032-1793643[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.007 0.32 11.1 0.6 1 23 56 78 56 78 0.96

2 8 0.0034 0.15 12.1 2.5 1 23 104 126 104 126 0.98

3 8 9.4e-06 0.00043 20.1 0.2 1 23 134 156 134 156 0.98

4 8 5.9e-06 0.00027 20.7 0.4 3 23 164 184 162 184 0.96

5 8 0.01 0.46 10.6 3.6 1 23 190 212 190 212 0.99

6 8 8.8e-05 0.004 17.1 4.4 1 23 218 240 218 240 0.99

7 8 0.071 3.2 7.9 1.4 2 23 250 271 249 271 0.95

8 8 3.9e-07 1.8e-05 24.4 1.8 1 23 283 306 283 306 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.007	0.32	11.1	0.6	1	23	56	78	56	78	0.96
2	8	0.0034	0.15	12.1	2.5	1	23	104	126	104	126	0.98
3	8	9.4e-06	0.00043	20.1	0.2	1	23	134	156	134	156	0.98
4	8	5.9e-06	0.00027	20.7	0.4	3	23	164	184	162	184	0.96
5	8	0.01	0.46	10.6	3.6	1	23	190	212	190	212	0.99
6	8	8.8e-05	0.004	17.1	4.4	1	23	218	240	218	240	0.99
7	8	0.071	3.2	7.9	1.4	2	23	250	271	249	271	0.95
8	8	3.9e-07	1.8e-05	24.4	1.8	1	23	283	306	283	306	0.98

Sequence Information

Coding Sequence: ATGGAGGCAAAATCGGGCGTCGGAATCCAAGATCACTGGATGAAGAGCATGATGGAGCCTGCCGGCAACGACAACAGTGACCGTTCGACTGTAAAACGAGAAAAAATGGCTGAATATAACGGCGAAAACTCTTATGATATGAAAAGACAGCAGAATGAGTCTAGATACCGATGCGATGTATGCGATCTGACCTTCCAGGCAATGGATTACTTGATATTACACAAGAAGTTTCACGGGAACGAAAAGGACTTGCCAATACCCCCGCCGGAGCAGACTTCGACAAAGGACGCGCCGAAAAAACGTAGGAAATTCAAATGTGACCAGTGCGATGTGAAAGTAAACTCTCAATATCATTTAGACATACACAAAAGCAAGCACGAAGGTGCAGCTTCAAAGAAATACATTTGCGAAGTCTGCGACAGAAGCTTTGTGGCCGCACAGTTCTTGAAGAGCCACATGCAAACCCATTCGGCGACAAGTACTATAAACTGTGAGCTGTGCAACAAAAGCTTCACGGGCCAAGCTTACCTAAAGCTCCACATGCAGCTACATAATGacgtaaaaaaatttaagtgttCAAAATGCGAAGACATGCTACCTACAAAGAATTGTCTTAAGATACACATGAAGAAACATACAaaagtgaaaaattttaaatgtgattattgtcataaattatttgtatcGAAGATAACAATGGAACGACATCGTCAGACGCATGAGGGACAGCCGATCGACTGTCAAGTTAAATGCACACAGTGTGATCGAACTATGCACTCCACATTACTGCGCACACATATAGCGAGGGCTCATTCATCCTCACTAGACGATGATGTGAAACGACCTTACAAATGCACAACGTGCGGAAAGAGTTTTatcgtaaaaataaatcttaatttacATATCAGAGTTTGCCATCCGGAATTGGCAGATCCTGAAGACGAAGATGAAGATATAATGACGGATAACTCATAG
Protein Sequence: MEAKSGVGIQDHWMKSMMEPAGNDNSDRSTVKREKMAEYNGENSYDMKRQQNESRYRCDVCDLTFQAMDYLILHKKFHGNEKDLPIPPPEQTSTKDAPKKRRKFKCDQCDVKVNSQYHLDIHKSKHEGAASKKYICEVCDRSFVAAQFLKSHMQTHSATSTINCELCNKSFTGQAYLKLHMQLHNDVKKFKCSKCEDMLPTKNCLKIHMKKHTKVKNFKCDYCHKLFVSKITMERHRQTHEGQPIDCQVKCTQCDRTMHSTLLRTHIARAHSSSLDDDVKRPYKCTTCGKSFIVKINLNLHIRVCHPELADPEDEDEDIMTDNS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01490445;
90% Identity: iTF_01490445;
80% Identity: iTF_00236931;