Bman011594.1
Basic Information
- Insect
- Bombyx mandarina
- Gene Symbol
- zfy1
- Assembly
- GCA_003987935.1
- Location
- NW:4352814-4366803[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 2.3 1e+02 3.2 0.3 2 23 6 27 5 27 0.95 2 12 6.3e-06 0.00029 20.7 1.7 2 23 1088 1109 1087 1109 0.97 3 12 0.00011 0.0048 16.8 2.8 1 23 1115 1137 1115 1137 0.98 4 12 0.00048 0.022 14.7 5.8 2 23 1144 1165 1143 1166 0.94 5 12 0.028 1.2 9.2 0.2 5 23 1179 1197 1178 1197 0.97 6 12 0.021 0.93 9.6 2.1 1 23 1202 1225 1202 1225 0.95 7 12 0.041 1.9 8.6 0.2 2 23 1235 1255 1234 1255 0.94 8 12 2.6e-05 0.0012 18.7 0.8 1 20 1261 1280 1261 1283 0.91 9 12 0.00035 0.016 15.1 1.3 1 23 1291 1313 1291 1313 0.98 10 12 0.0028 0.13 12.3 7.6 1 23 1319 1341 1319 1341 0.98 11 12 1.2e-05 0.00056 19.7 2.2 1 23 1347 1371 1347 1371 0.98 12 12 0.00026 0.012 15.6 4.3 1 23 1377 1399 1377 1400 0.95
Sequence Information
- Coding Sequence
- ATGGATCAATTAATACAATGTCCTGTGTGCACCCTTTACCTTCACAATGGAATGAGTTTGGAATCACATCTCGACACTCACCCCAAGGACCAAGTTATCAAAGCTTTGTGTTGTCTTACCTCAAAAGGCAGTGGTTTCGGCAGTAGAACATCAACTCCTGCAAACTCGGAACGCTCATACAGAAGTCGGTCTCGGACACCTGCAGATGACAGATGGAATGGATCACAGCGAAGCAGTGAACCTGACCGCTACTGGCGAAGGCCACCAAGTAGGACTCCCAAATCAACATCAATTACATCTCTATCACGGAATGAGACACCTGAAATTAGAGATAGTATTAATTTTGACACAAATTCAGTTCCATCAGGTCAGCATTCTTTGTCATATGGATTGAAAAGTGATAAAATGCAACAGTTTCAAAGTTCTCAACTGTCAGATTTTGAACAGCCATTTACAGTGTTTCAAGAACCACAAGAAGATAGAGAGATTAAATATTCACGGAGTGCTGAATATACTGCCATGGATAATGTAAACAATGTTTTTACATATAACATACCACCAATAGCTGCAGGCTTAAGGTTTCCACCGCAAAACAATCTTGTGTCAGCAGGTCATAAGAAAGCCCAAGATTTTGTAAAGATTCTACCAAAGCCCAATAACATACTTTTGAAAACCAATGTAGGTGGGATACAGTACATTACATCAGGAGTGAAACCTATGCATGTCATGGTGCCGACAACACCAACATTTGTGCAGAAGAATATACAGAACAACATGCTGATCTCAGGAAATATTTCTAATTCATCAGCCCATATTGATGCTAAAGTTGTAGCTCCACAGTTATCAGGCGCCCAATTCAATAACATGTCAACAGGTGCCTTCACTCCCAGTTTATCAACGGTTGTGACTcaaaattcacaaataatttacaGAGAAATGGTGCATAACATAGATGGTAAGCCTTTTATTTCAAGTATGCCCACTATGATTACAACAGGACCGGATGCTGTGACAAACGTAGCACAAAGTAGTTCAATGTATCAGAACTTAATGGTTTTGGATCAATTTGGATCTTGCATGTACACACCACCTCAACAGTTTGTTCCTAAATCGTGTACTACCACTGTTTATACAGACACCGATACCTTAATTCCAAATTCCCAActgtgtaaaaataatttaaatgacccAAAAACTTTAATCATAGAAGTTGGCCCAATAATTGCTCCTGAATCAGTTTCATCTACATCTACATCAACCAGTGTGGTGCCATCGTCTGGTGTGTCAGTTAAATCTGATGTAACAGACACATCTGACACCATAAATAAACTTGAATACATGAGTGAGGCGTCAAGTTCAAGTAAAGGATTAAAAATTCTCAGCAATATCAAGGTTGAAGTACCAGTACAGCATAACAAAAATATGGTAAATACTTTAATGGATTTAACAGAGTCAAACGATCCTGATTTCATGGATAGCACTGAGCCCTCAAGATCACCAGAGAAAATCCTGCCTGATTTAGATGACGATAACCACAATATTAGTGAATGTATTCCGCCTTCAAATTCTAGCAGTATCAGTTCAGTACCACGCACATTCACCAACATGAAAAGTTCAAATAATGTTTCACCATACAAAGAGTTATGTAATAAAGTAATCGACTCCGAGTTTAGTGATAGCTGTCCCATTCCTGATTTAATATGTAATGAGAAACCATCGATATCACCATGCAGTGAACTATCAGAGAATGGAGATAATTCCACTGATCGTATATCTATTTCCCCTAAACCACAGAGATCCATTGAAACTCCacataataaagaaattaatgtaAAGAAGACCACCTTGCctgtaaaatcaaataaaaacaattctgCACGATTGAACAACATTTTTGTTAAGAAGACCAAGAAAATACTTCAAATAAAGAATGCTAAAACTTTAGGCAGCACTGTGAAGAAGAATGAACCCGAGCCAGTGCCATCAACATCAACCAGTAAATCACCAGAGAATTTCATTATGATGCATGACAGGAACGGACAAATGGAAACTACTACACTCCTAACTGTGTCAGTTGaggaaattaaagaaaatgacGAAACTGATGATTTTAACACAGACATTGGGACACCTATGCAAATGGAACCAGGGCAACGAAATAGTCTAAATGACAGTAATGACATGAAAATAGTTGAAATTCAAGTGAAGGAAGAAGTGAATACAAGCAATGAAGGTGCCTTTTCTAATGATACACCTGCAGTTAAAACTAAGGACAACTTGCGGCCAATCCATGTCATACCATACAGTAATATGTCAGCTGGAGATTTTGATGATGAGTCCAACCACAGAGAACTGCTGGATCTAGAAGCAGCCTCCAAGGGCAAACAGTTTGTCAGTATGATGAACGAGAACTACTTTGGCGAAAATCTGTATCCAGATTATTTCACAACGGACCGTGATGCTTTTGGTAATGAAAGGGAAATTACTCAGAAAGATGGAATGTACAACATTTGGGGTGAACCGTCACAGAAGGAAAATGAATTTGTATTACCAAATTTCATACAAGATACATACAAGATTACAGATAGTACAGGTATAGATTACTCTGCATTTTCTGGAAGAGAGGTACAGGGAGATAAAGAAGGCGATGGTTGTGAGAAGGACAGCAAGGCTGATGTACTAAGTGAAAGCAGGAGCGGGGGTGATACTCCATTGAATATTTGTGCAGATGAGCGTATGCCAGCACGGGGAGAGCTCAGTGGACAGGAAAGCAATGGCGATATGGAGTCGGCTTGGAGTGGGATATACACCGAGGTTACCGCGTCGGAGCCCTATGACCTCATCGCGAGGGAGAGCTGGGTCTCGGACGGCTCCGAAGTGGATCTTGCTGAGAAGATGGAAACGCTGGACGATGACGTGACACTGAAGAAGGTGCGCGGCGGGtcgggcgcggcggcgggcgggCCGGGGGGCGCGGCGTCGCGCGTGTCGTACAGCCGCCTGCTCACCGCGCGGACCATCAAGCGCGAGCGGAGCGCCGCCCGCAACAGAGCCGCGTGTAATCTGATAACGGTCGATTCGAAGGCTTCGATAACGACCACGATACTTCAGTCATACGACATGGAGGACTCCAAGCCGAAGATCGAGGGTCTGATCAAGCAGGAAACGAAGCGTAGAAGGAAGGACTTCGTCTGTTCGACCTGCAAAGTGGACCAGCTGACCGACGCCGCCTTCCACGCGCATCTCAAGATACATCCGCTGGAGTGCATGACCTGCGGGAAGTGCTTCTACAGAAGAGCCAATCTCGCTCTTCACATAAAGACGCATTTAGGAATTAAGAATTACAAATGTGACGTCTGCGAGAAGAGGTTCATAACGCGACAGAAGTTAACGGAACATCACAACATACACACGGGACGATCGCCGATCAAGTGCACCCACTGCGACGAGACCTTCAAGAGATACTCCAATATGTTGCAGCACAGAGACCGGCACCACCTGTCGAAGCGCGTGCGCGCGCGCGAGGTGTCGTGCGAGTGCGGGCTGGTGTTCGCGTCGCGCGCCCGCCTGCGCTGGCACCGCGAGACGCACGCCGCGCGCCCGCACGCCTGCGCGCTCTGCAGCGACAAGTTCGTGCACGCCGCCTCGCTCACCCGCCATCTGCGCCGCACGCACCGCCAGCCCGACCCGCACCTCGACGTGCCCTGCCCCGTCTGCAAGCAGCTGTACATCCGCACGAACTTGCGCGCGCACATGCAGACGCACACCGGGAAGCGGCCCTTCCCGTGCGTCATCTGCAACAAGTCGTTCACCACCAAGTGGAACCTGAAGCTGCACCGGTGGACCCACATGAACCGGTCCGCGAAGCCCTTCAAGTGCCACCTGTGCAAGGGCGCGTTCATCCGGCAGTCGGAGTACGTGTCGCACATGAACGCGCACAAGTCGGTGCGGCCCTACACGTGCAACTACTGCGGCTGCAAGTTCATCAGGAAGTACAACTGCCAGAGGCACGTCCGGGAGCACGAGACGGCCAAGAAGTTCGTCTGCAAGGTCCAGGAGTGCGGTAAGTCGTTCCATCGGAGCTACTATCTGTCCGAGCACATGAAGGTCCACAGCGGGGTCCGTCCGTTCGCTTGTAACATCTGCGGGAAGACATCGAGCAACAAGTCTAATCACAACAAGCACATAAAGATCCATCACGCGCGGGAGCCCGTGGCTACAGAGGCGTAG
- Protein Sequence
- MDQLIQCPVCTLYLHNGMSLESHLDTHPKDQVIKALCCLTSKGSGFGSRTSTPANSERSYRSRSRTPADDRWNGSQRSSEPDRYWRRPPSRTPKSTSITSLSRNETPEIRDSINFDTNSVPSGQHSLSYGLKSDKMQQFQSSQLSDFEQPFTVFQEPQEDREIKYSRSAEYTAMDNVNNVFTYNIPPIAAGLRFPPQNNLVSAGHKKAQDFVKILPKPNNILLKTNVGGIQYITSGVKPMHVMVPTTPTFVQKNIQNNMLISGNISNSSAHIDAKVVAPQLSGAQFNNMSTGAFTPSLSTVVTQNSQIIYREMVHNIDGKPFISSMPTMITTGPDAVTNVAQSSSMYQNLMVLDQFGSCMYTPPQQFVPKSCTTTVYTDTDTLIPNSQLCKNNLNDPKTLIIEVGPIIAPESVSSTSTSTSVVPSSGVSVKSDVTDTSDTINKLEYMSEASSSSKGLKILSNIKVEVPVQHNKNMVNTLMDLTESNDPDFMDSTEPSRSPEKILPDLDDDNHNISECIPPSNSSSISSVPRTFTNMKSSNNVSPYKELCNKVIDSEFSDSCPIPDLICNEKPSISPCSELSENGDNSTDRISISPKPQRSIETPHNKEINVKKTTLPVKSNKNNSARLNNIFVKKTKKILQIKNAKTLGSTVKKNEPEPVPSTSTSKSPENFIMMHDRNGQMETTTLLTVSVEEIKENDETDDFNTDIGTPMQMEPGQRNSLNDSNDMKIVEIQVKEEVNTSNEGAFSNDTPAVKTKDNLRPIHVIPYSNMSAGDFDDESNHRELLDLEAASKGKQFVSMMNENYFGENLYPDYFTTDRDAFGNEREITQKDGMYNIWGEPSQKENEFVLPNFIQDTYKITDSTGIDYSAFSGREVQGDKEGDGCEKDSKADVLSESRSGGDTPLNICADERMPARGELSGQESNGDMESAWSGIYTEVTASEPYDLIARESWVSDGSEVDLAEKMETLDDDVTLKKVRGGSGAAAGGPGGAASRVSYSRLLTARTIKRERSAARNRAACNLITVDSKASITTTILQSYDMEDSKPKIEGLIKQETKRRRKDFVCSTCKVDQLTDAAFHAHLKIHPLECMTCGKCFYRRANLALHIKTHLGIKNYKCDVCEKRFITRQKLTEHHNIHTGRSPIKCTHCDETFKRYSNMLQHRDRHHLSKRVRAREVSCECGLVFASRARLRWHRETHAARPHACALCSDKFVHAASLTRHLRRTHRQPDPHLDVPCPVCKQLYIRTNLRAHMQTHTGKRPFPCVICNKSFTTKWNLKLHRWTHMNRSAKPFKCHLCKGAFIRQSEYVSHMNAHKSVRPYTCNYCGCKFIRKYNCQRHVREHETAKKFVCKVQECGKSFHRSYYLSEHMKVHSGVRPFACNICGKTSSNKSNHNKHIKIHHAREPVATEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00236908; iTF_01490406;
- 90% Identity
- iTF_00236908;
- 80% Identity
- -