Bman009820.1
Basic Information
- Insect
- Bombyx mandarina
- Gene Symbol
- -
- Assembly
- GCA_003987935.1
- Location
- NW:1774842-1782290[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00021 0.0097 15.8 4.2 1 23 90 113 90 113 0.95 2 10 0.00021 0.0094 15.9 3.0 3 23 122 143 121 143 0.93 3 10 0.099 4.5 7.5 5.6 2 23 151 173 150 173 0.95 4 10 0.00064 0.029 14.3 0.1 2 21 181 200 180 201 0.94 5 10 4.8e-06 0.00022 21.0 3.6 1 23 210 233 210 233 0.97 6 10 0.0037 0.17 12.0 5.2 1 23 239 262 239 262 0.93 7 10 1.2e-05 0.00055 19.8 0.3 3 23 271 291 269 291 0.97 8 10 0.003 0.14 12.2 2.0 2 23 299 321 298 321 0.96 9 10 2.7e-05 0.0012 18.7 2.7 2 23 328 350 327 350 0.93 10 10 4e-05 0.0018 18.1 4.7 1 23 360 382 360 382 0.97
Sequence Information
- Coding Sequence
- ATGGATTTCTCAAACTCGATAACTCCTCAACTGCCGATGGCCATAAAACAAGAGATCATTCCACCGGACCCGCACCAGCACCCAAGCCAACCACCTTCCATTTCCGAGTCGACTCTGCCACAACCGCACGCCCTGAAGAAACCCAAAGACGAGGTGGTTAAATTTATAAGCGTAAACAGCGACGCGCTGACCGAGGAGCAGCGCGCCATGTACCAGTCGGTGCTGTCGACGTGGAAGCCAATAATGTTTCCGAAAAGCGAAAAGCGATATATCTGTCATAAATGCAATAAAGAATTCAAGAATTACCAGAACCTGTACCTGCACACGACGAGAGTGCACTCGACCGAGGAGGCGGCGGTGCTGTGCGACATATGCGACAAGACGTTCAAGAATAAACACTATTTGTACATGCACAAAATTAATAAGCATTACTCCGAAATTGAGAAATGCTACTGTCAGTTCTGCTTGCACGAGTTCAAGACGAGGAAGGCCCTCCAAATGCACGTCAAGAAAATCCATCCGAACACGTTACCGGAGCTGAAGTGCGTGGAGTGCGGCAAGGAATTCCAGGTGCCCTACAAGCTGCGGTATCACATGGAGTCTTGCATCACATCGAACAGGGAGAAGTTCATATGTCAATTGTGTCAGAAGCCCTTTAAAaatcatttgaatttgaaacgcCACATGCAGACCCAGCACACGCCAGTCGAGAGACACCCCTGCGTGTTTTGTCCGATGACCTTCAAATCGCGGCATCATATGAAGAGGCACGTCCTAAACATCCATCCGCCTTTAGAGTCGAAAGTTAACTGTCCGGAATGTCAAAAGGAATTCAAGAACGACCAGTACCTCCGTGAGCACATGCAAGTGCATTCATCGGCCGATTCTAAAGTTAAATGCGAGCTGTGCGATAAATACTTTCATTCAGCGATACGCTTGAAGAAGCACAAGAAGATCGTGCATCCGACCAAACCGAAACTGCGCTGCGAAAAGTGCGACAAGGAATTCGCGCATCCCCATTACTTGACGCGCCACAAGAACGCGGTGCACATGGAGATCGACGAGAGCAACTACGAGCACGAGTGCGAGAAGTGCGGGAAGAAGTTCAAATTAAAGAAATACTTGAGCAACCACCTTCAGAGGCACGAGCAGCAACAGATGAAGAGGATCTCGAGAATGGTCAAAACCGTCATAGGTGAAGGCGGTGAACCGAATGTCGTCAAGAAACGGGGACGCCCGAGGAAGCAACGGGTCGAGATCGAGTTCATAAAGTGCGAGCCGGTCTCCAGCAGTGACTCCGACGAGACGGACTCCGAGTCGGAGTGA
- Protein Sequence
- MDFSNSITPQLPMAIKQEIIPPDPHQHPSQPPSISESTLPQPHALKKPKDEVVKFISVNSDALTEEQRAMYQSVLSTWKPIMFPKSEKRYICHKCNKEFKNYQNLYLHTTRVHSTEEAAVLCDICDKTFKNKHYLYMHKINKHYSEIEKCYCQFCLHEFKTRKALQMHVKKIHPNTLPELKCVECGKEFQVPYKLRYHMESCITSNREKFICQLCQKPFKNHLNLKRHMQTQHTPVERHPCVFCPMTFKSRHHMKRHVLNIHPPLESKVNCPECQKEFKNDQYLREHMQVHSSADSKVKCELCDKYFHSAIRLKKHKKIVHPTKPKLRCEKCDKEFAHPHYLTRHKNAVHMEIDESNYEHECEKCGKKFKLKKYLSNHLQRHEQQQMKRISRMVKTVIGEGGEPNVVKKRGRPRKQRVEIEFIKCEPVSSSDSDETDSESE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00236875;
- 90% Identity
- iTF_00236875;
- 80% Identity
- iTF_00236875;