Bman008254.1
Basic Information
- Insect
- Bombyx mandarina
- Gene Symbol
- -
- Assembly
- GCA_003987935.1
- Location
- NW:80309-88954[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00017 0.0079 16.1 0.0 1 23 246 269 246 269 0.98 2 10 0.011 0.48 10.5 0.3 3 23 296 317 294 317 0.94 3 10 0.022 1 9.5 1.6 1 23 340 362 340 362 0.97 4 10 1.2e-05 0.00052 19.8 1.3 1 23 366 388 366 388 0.98 5 10 0.0055 0.25 11.4 4.3 1 23 393 416 393 416 0.90 6 10 0.0018 0.081 12.9 1.7 2 23 424 446 423 446 0.96 7 10 0.00098 0.045 13.8 1.8 1 23 452 475 452 475 0.98 8 10 1.9e-05 0.00086 19.2 2.9 2 23 482 503 481 503 0.96 9 10 1.3e-07 5.7e-06 26.0 0.2 1 23 509 531 509 531 0.98 10 10 0.0004 0.018 15.0 5.5 1 23 537 560 537 560 0.97
Sequence Information
- Coding Sequence
- ATGATTCACATTTTTGGGCTTTTCAAAGCGAGTTCTTGTTCGTGGACAAAGTATATGTTCAAGTTAAATTGTATAATGGAAGAGTGTCGTTGTTGTTTAACCCCCGGCACTCACAAAAATCTGAAAGCCCAGTACAGTCGGCTCGGAAAAACGGAAATTTACGCTGAAATGCTGAAGGAATGTTTCAACATTGTCCTTTCGTCGTCCGCGCAATGGTCGACCGCGATATGCGACCAATGCATCGATACGCTTCGCAGCTCTGTGGACTTCAGACGGCAGGTGTTGCGTGTCGAGCAGCAACTGTTGGAGAGGACTAAAGCATTAGAAGCTTTTGTTTCAGATGGTATAGTCGAAGTGAAAACGGAGCCCTTGGACGCGAATGGCGGAGAAGATTCCGACGATTACTTTCTGCCTTGCaccgAAGTGAAGATTAAGAAGGAACCGAAGCCAGATATAAAGAAGCGTCACAGAAGTGTGAGGGAGAAGTGTGTCGGCGTGAATCCCGAGTGGGAGGGAGATGACACCAACATTCCAACAAACAATCGGGTCGACGCCAAAGACAAGGAAAAGAGCATGAAAAGGATCAAGAGGAGAACAGTTACTATTGAAAGGTCAAAAGTTAAACTCCAATGGACCAGAACAGCTATAGCTGACAAGATGAAGCACCGGGAGAACTTGCTTACGGTCTTGAAGTATTCGAACGCGACACCCTTCAAGAAGAAGTCGTTGGTCGGCTTTAGTTGCGCGTATTGCGAGGGGGCGTACCCCGACCCGGGCGAGCTGCGGCGCCACACCCGCACCGAACACGCCGCCCAGCGCCTGGAGCTCCGACCCGCGCGCGACCTCTCCCAGTACTACGTCAACCTGGACGTGGACAACCTCGCCTGCACGCTCTGCGAGAAAACCCTCGACAACCTAACTACCCTCAAGGAGCACCTAACGAAAGCCCACCAGAAAACCTTCCACGCGGACATCAAGGACCACATCCTCGAGTTTAAGCTGAAGAGCGGCGACGTTTTCGACTGCGCCAAGTGCGCGTCCACGTACGAGACGTTCAAGATGCTGAAGCAGCACATGAACAAGCACTACAGCAACTACGTGTGCGGGAAGTGCGGGACCGCGTTCGCGACCAAGAGGTCCCTGCACTCGCACCGGAACGTGCACAAGGAGGGCAGCTACAAGTGCGGCTACTGCGACAAGGTGTTCTCGAACCGTCCCAAGAAGTGCTACCACGAGAAGCTGCAGCATCTGGGCGAGAGCAACATCTCGAAGTGCCAGCACTGCGGTGCGCCCTTCAAGAGCTACTACCAGCGGAACCAGCACCTGATCCGGGTGCACAACGACGAGGCCAAGTACAAGTGCAACGTCTGCAACAAGAGCTATCTGCTCAAATCGCTGCTCATGTACCACATAAAGAGGAATCACTTGCTGGAGAGGAACTGCCAGTGCACGGAGTGCGGCTACCGGTTCTTCAGCAAGAAGGCTCTGAAGGCGCACATGGTCCGGCACACGGGCGAGCGGATATACGCGTGCGAGGTCTGCGGCAAGGCGTACGCCAGGAAGTACACCCTGAGGGAGCACATGCGCATCCACAACAACGACCGGCGGTTCAAGTGCCACGTGTGCAGCCTGACCTTCGTGCAGAAGTGCAGCTTGAAGAGTCATCTGCTGTCGAACCACGGGATCAGCGTGGCGGCCTGCGAGATCACCATGacgacaaattga
- Protein Sequence
- MIHIFGLFKASSCSWTKYMFKLNCIMEECRCCLTPGTHKNLKAQYSRLGKTEIYAEMLKECFNIVLSSSAQWSTAICDQCIDTLRSSVDFRRQVLRVEQQLLERTKALEAFVSDGIVEVKTEPLDANGGEDSDDYFLPCTEVKIKKEPKPDIKKRHRSVREKCVGVNPEWEGDDTNIPTNNRVDAKDKEKSMKRIKRRTVTIERSKVKLQWTRTAIADKMKHRENLLTVLKYSNATPFKKKSLVGFSCAYCEGAYPDPGELRRHTRTEHAAQRLELRPARDLSQYYVNLDVDNLACTLCEKTLDNLTTLKEHLTKAHQKTFHADIKDHILEFKLKSGDVFDCAKCASTYETFKMLKQHMNKHYSNYVCGKCGTAFATKRSLHSHRNVHKEGSYKCGYCDKVFSNRPKKCYHEKLQHLGESNISKCQHCGAPFKSYYQRNQHLIRVHNDEAKYKCNVCNKSYLLKSLLMYHIKRNHLLERNCQCTECGYRFFSKKALKAHMVRHTGERIYACEVCGKAYARKYTLREHMRIHNNDRRFKCHVCSLTFVQKCSLKSHLLSNHGISVAACEITMTTN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00236869;
- 90% Identity
- iTF_00236869;
- 80% Identity
- -