Basic Information

Insect: Bombyx mandarina
Gene Symbol: -
Assembly: GCA_003987935.1
Location: NW:4878073-4907129[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0032 0.14 12.2 5.7 1 23 170 192 170 192 0.98

2 11 4.8e-05 0.0022 17.9 0.8 1 23 198 220 198 220 0.98

3 11 0.00029 0.013 15.4 1.8 1 23 226 249 226 249 0.96

4 11 0.024 1.1 9.4 3.3 1 21 255 275 255 277 0.95

5 11 8.6e-05 0.0039 17.1 2.7 1 23 283 305 283 305 0.99

6 11 2.4e-05 0.0011 18.8 5.5 1 23 311 333 311 333 0.98

7 11 0.0019 0.084 12.9 1.0 1 23 341 364 341 364 0.96

8 11 0.012 0.54 10.3 5.2 2 23 371 392 370 392 0.96

9 11 7.3e-05 0.0033 17.3 2.2 1 23 398 420 398 420 0.99

10 11 4.3e-06 0.0002 21.2 2.4 1 23 426 449 426 449 0.96

11 11 2e-05 0.00092 19.1 5.5 1 23 463 485 463 485 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0032	0.14	12.2	5.7	1	23	170	192	170	192	0.98
2	11	4.8e-05	0.0022	17.9	0.8	1	23	198	220	198	220	0.98
3	11	0.00029	0.013	15.4	1.8	1	23	226	249	226	249	0.96
4	11	0.024	1.1	9.4	3.3	1	21	255	275	255	277	0.95
5	11	8.6e-05	0.0039	17.1	2.7	1	23	283	305	283	305	0.99
6	11	2.4e-05	0.0011	18.8	5.5	1	23	311	333	311	333	0.98
7	11	0.0019	0.084	12.9	1.0	1	23	341	364	341	364	0.96
8	11	0.012	0.54	10.3	5.2	2	23	371	392	370	392	0.96
9	11	7.3e-05	0.0033	17.3	2.2	1	23	398	420	398	420	0.99
10	11	4.3e-06	0.0002	21.2	2.4	1	23	426	449	426	449	0.96
11	11	2e-05	0.00092	19.1	5.5	1	23	463	485	463	485	0.97

Sequence Information

Coding Sequence: ATGCCTCCTGGTAAcagaaaagagaaaaaaaaagacaacatgGATGAAGAAACTACAACAGTTATCACTATGGAAAGTGAAGACGAACCTGACACAGGGGTGACATACTTCGTAGACGAAGAAGGCAGGTACTATTACCAGCCCACTGGGAATAATCAGGACCTGGTTCCGCTGCAGACTGAAGCAACGGAAACCACAAATAAAGACTCGATTAGCGATGCTGCTGAAGATGTGCTGATGAGCAACGAATCCGAACAATACCAGACCGTGACTCTTGTTCCGTCAGAGAACAGCGGCGGTGAAGTCAGCTACGTCCTCGTGGTGCAAGAAGAGACTAAACCTATCAACCTTGATATCAAAGTCGATCAGGATGAAGAAAAGGTCTCCGAAGACGTGTATAACTTTGAAGAGGAGGAGATTGAGGCCGACGTTACCGACGAAGAAGACGAAAGCGAAGCAAAGAAAGCTCAACCGCAGACGAAGAAGGGAAAGTTCTTACGTCCATGTTTCACGTGCAATTTTTGTTCGTATTCAAGCCACAGGCGATATCTGCTTCTTCGCCACATGAAATCTCACTCTGAAGATCGTCCCCATAAGTGTGGTGTGTGCGAGCGCGGCTTCAAGACAATTGCATCGCTTCAGAACCATCTCAATATGCATAATGGAGTGAAACCTCATGTTTGCAAATTTTGCAACAGCCCCTTTACTACCTCAGGCGAGCTGGTCCGTCATGTACGCTACAAGCACACACACGAAAAACCTCACAAATGTACGGAGTGCGACTACGCTTCGGTCGAACTTTCGAAGCTGCGTAGGCACGTGCGTTGTCATACTGGAGAGAGACCTTACCAGTGTCCACACTGCACGTACGCTTCACCGGACACTTTCAAGCTGAAACGCCATCTCCGTACTCACACTGGTGAAAAACCGTACAAATGTGAACACTGCAACATGTGCTTCACACAATCAAATTCTCTTAAAGCTCATAAGCTTATTCATAAtgTGTCTGAAAAGCCGGTCTACGCTTGTGAGTTGTGTCCAACGAAGTGCGGCCGTAAGACTGATCTTCGGATTCATGTGCAGAAACTTCATACATCTGACAAGCCTCTCAAGTGCAAACGATGCGGGAAAACCTTCCCCGACCGTTATTCCTGCAAAATGCACAATAAGACTCACAATGGCGAGAAATGTTACAAGTGCGAATTATGCCCATATGCTTCTACAACACTACGTCACCTCAAATCTCACATGCTCAAGCATACTGATGAAAAACCTTTTTCTTGTGACCAATGCGATCAATCTTTCAGGCAAAAGCAATTGCTACGTCGTCATCAGAACTTGTATCACAATCCTCACTATGTTGCCAAGCCACCAAAGGAGAAAACCCATTCTTGTCATGAATGTAAACGGAATTTTGCCCACAAAGGCAACTTGATTCGGCACCTGGCCACACACGATCCAGAATCTGGCCACCAAGAAAAGTTGCTTGCTCTGAAAATGGGAcgtgaaaagaaaataaagtacCTCAATGGACCAATAATCAAAGATAGTGAAAATGACGATCCTGATGTGATCCGTCTTGGACTCGGGACGACCGGTCTGAATTCTAACGATCTGAAACGAGGCGAGCTGGTAACCGTCGCTGACGGTGAAGGACAGCAGTATGTGGTGCTCGAGGTTATACAAATGGAAGATGGATCCGAGCAACAAATTGCTGTTATAACCCCTGATTATCTTGAAGAGGAAGATGAAGCAGaAATGGAAAGTGTAGATTCTGATGATGACAAATCTTCTATAGCACAATCCAGCCAGAAAAGAACCAGGACCATTAAAGTAGAAAACGATGTGGATTCTTGCTTCGGTTTTGATGAAGAGGACGAAGATGAGGAGGAGGGTGAAGATGAAATCGAAAATGAGGAATACAAGGAAGTGGTGCTGCGCATAGTTTAA
Protein Sequence: MPPGNRKEKKKDNMDEETTTVITMESEDEPDTGVTYFVDEEGRYYYQPTGNNQDLVPLQTEATETTNKDSISDAAEDVLMSNESEQYQTVTLVPSENSGGEVSYVLVVQEETKPINLDIKVDQDEEKVSEDVYNFEEEEIEADVTDEEDESEAKKAQPQTKKGKFLRPCFTCNFCSYSSHRRYLLLRHMKSHSEDRPHKCGVCERGFKTIASLQNHLNMHNGVKPHVCKFCNSPFTTSGELVRHVRYKHTHEKPHKCTECDYASVELSKLRRHVRCHTGERPYQCPHCTYASPDTFKLKRHLRTHTGEKPYKCEHCNMCFTQSNSLKAHKLIHNVSEKPVYACELCPTKCGRKTDLRIHVQKLHTSDKPLKCKRCGKTFPDRYSCKMHNKTHNGEKCYKCELCPYASTTLRHLKSHMLKHTDEKPFSCDQCDQSFRQKQLLRRHQNLYHNPHYVAKPPKEKTHSCHECKRNFAHKGNLIRHLATHDPESGHQEKLLALKMGREKKIKYLNGPIIKDSENDDPDVIRLGLGTTGLNSNDLKRGELVTVADGEGQQYVVLEVIQMEDGSEQQIAVITPDYLEEEDEAEMESVDSDDDKSSIAQSSQKRTRTIKVENDVDSCFGFDEEDEDEEEGEDEIENEEYKEVVLRIV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00236865; iTF_01490385;
90% Identity: iTF_00236865;
80% Identity: iTF_00236865;