Basic Information

Insect: Bombyx mandarina
Gene Symbol: -
Assembly: GCA_003987935.1
Location: NW:109159-111379[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.25 11 6.2 0.0 2 23 38 60 37 60 0.90

2 14 0.25 11 6.2 0.0 2 23 108 130 107 130 0.90

3 14 0.00043 0.02 14.9 0.4 3 23 152 173 152 173 0.98

4 14 0.0011 0.049 13.6 0.8 1 23 178 201 178 201 0.96

5 14 0.00064 0.029 14.3 0.9 1 23 206 229 206 229 0.95

6 14 0.061 2.8 8.1 0.3 2 23 232 254 232 254 0.90

7 14 0.0078 0.35 10.9 1.1 1 23 335 358 335 358 0.95

8 14 1.7e-05 0.00076 19.3 0.2 2 23 431 453 430 453 0.96

9 14 4.2e-05 0.0019 18.1 0.1 3 23 460 481 459 481 0.91

10 14 0.00072 0.033 14.2 3.3 2 23 486 507 485 508 0.95

11 14 0.00011 0.0049 16.8 0.8 1 23 513 536 513 536 0.97

12 14 0.0004 0.018 15.0 5.8 1 23 540 563 540 563 0.97

13 14 0.0007 0.032 14.2 0.2 3 23 571 591 569 591 0.96

14 14 0.0021 0.093 12.7 2.3 1 23 597 619 597 619 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.25	11	6.2	0.0	2	23	38	60	37	60	0.90
2	14	0.25	11	6.2	0.0	2	23	108	130	107	130	0.90
3	14	0.00043	0.02	14.9	0.4	3	23	152	173	152	173	0.98
4	14	0.0011	0.049	13.6	0.8	1	23	178	201	178	201	0.96
5	14	0.00064	0.029	14.3	0.9	1	23	206	229	206	229	0.95
6	14	0.061	2.8	8.1	0.3	2	23	232	254	232	254	0.90
7	14	0.0078	0.35	10.9	1.1	1	23	335	358	335	358	0.95
8	14	1.7e-05	0.00076	19.3	0.2	2	23	431	453	430	453	0.96
9	14	4.2e-05	0.0019	18.1	0.1	3	23	460	481	459	481	0.91
10	14	0.00072	0.033	14.2	3.3	2	23	486	507	485	508	0.95
11	14	0.00011	0.0049	16.8	0.8	1	23	513	536	513	536	0.97
12	14	0.0004	0.018	15.0	5.8	1	23	540	563	540	563	0.97
13	14	0.0007	0.032	14.2	0.2	3	23	571	591	569	591	0.96
14	14	0.0021	0.093	12.7	2.3	1	23	597	619	597	619	0.95

Sequence Information

Coding Sequence: ATGGCGCGGAAGAGTCATACTCAGTCGCACGCCCCTTGTACCACGAAAGATTACGCTCTGAGAATCATAAGAGGCAGTCACGTCGAAATCAAAATAGACGTTTCGGAGATTGTGTGCAAAATTTGCTACGAACCTTTTGATAGTTTCGAGGAAATCGTGAATCATTTAATCGGTAAACATAAATTAAGTTACGAAAAGCAAATTGGCACTCCATACCAAGAGTACAGATTGAGTGATTGCGNCCCTTGTACCACGAAAGATTACGCTCTGAGAATCATAAGAGGCAGTCACGTCGAAATCAAAATAGACGTTTCGGAGATTGTGTGCAAAATTTGCTACGAACCTTTTGATAGTTTCGAGGAAATCGTGAATCATTTAATCGGTAAACATAAATTAAGTTACGAAAAGCAAATTGGCACTCCATACCAAGAGTACAGATTGAGTGATTGCGGCTGCACCCGCTGTGGGGAGCGATTTGCTTATTTTACTAATCTGGTCAAACACGTGAACACCGCACATCCACAGAACCGCTTCATATGCGATAAATGCGAAATGCCCTTCAACAAGAAACGCGATTTGGCAGTACACTTTAGGAATTATCACGGCGAAGAGAACTACAATTGTGTGCAATGCTCGCAGAATTTTAAATCCTTGGTCACGTTACGCCGCCACCAAAACGACATACATTTTAGGCAGTGCAAAACTTGTGGGAACCGTTTCGAATCCGTTGCGGTTTTGCGTAAGCACGAGGTATCCGAACATCCTGACGACGGCAATTACAAATGTCGGTATTGCTGCAAGGAACTACACAGTGCGCCGGGTCTGAGGTTGCATTACGGGAAATGTAAGGTTCGAGCCATCGCCTCAATCGACCCTAAATGTCCGTTAATATCCGGAGAAATACGCAGGCGTAAActgaaaaacaatttgaaagCAATAAGGAATAATATTCAATGCGTCTTAAACATGTCAACTGCGACACCTTTTAAGTACTTCGCCAAGTattcatgtttttattgtacactaaaGTTTGTTGAGTTTGAAGATCTGCGACAGCATACCATGTTAGAACATCCTGTATGTGACGTTAAAGAGAAATACATGAGGCAGTGTAAGGGTGATAGGGTTTGCGTTAAAATTGATATATCTTCTCTCAAGTGTAAGCTGTGCTGTATGCCAATGGAGGACCTTGATTTGCTGATCGATCACTTAATATCGGAACACAAAGCTGGTTATGATAAGTCCATAAAAGGTTGTCTCGATCCTTATCGCATAATCAAAGATAGCATTCCTTGTCCTCTATGCGAAACTGTTTTCCGTTACTTCAGCACCCTGCAGCGTCATATCAACTCCGATCATAGCAACAACAACGCGATCTGCGATTTCTGCGGGAAAAGCTTCAACAAGCTCAGTAATTTGGTCGTGCACATTGGGCTCGCGCACATGGGTGCGACCCAGTGTGGAATCTGCGGCGCGAACTTCAAGAACAACTGGTGCTTATCCCGACATAGGGCGAAACATCACGGCGTCAAAGATTACAAGTGCACGAAATGCCCCGAGCTTTTCATATCTTCGTATCAAATGCAGAAGCACCTAATCAAAGTGCACAACGAGGGACACAAGTGTGTTCATTGCGGCAGGCTGTTTACGAGGAATTCTTTCATGAAAGACCACATCAGAAGAACGCATTTGAAAGAGAAAAATATCGCATGCGCAGTGTGCAATGAAAAGTTTTTCGATAACTATCTGCTGAGGCTGCACATGGTAAAGCATGACGGGGAAAGGAAGTTTACTTGTGAGGTCTGCGGCAAGGCGTTCCTGAGGAGAAGCAACCTCAATTGTCACAAAGAGATGCATAAAAAGTATGGACATATTTAG
Protein Sequence: MARKSHTQSHAPCTTKDYALRIIRGSHVEIKIDVSEIVCKICYEPFDSFEEIVNHLIGKHKLSYEKQIGTPYQEYRLSDCXPCTTKDYALRIIRGSHVEIKIDVSEIVCKICYEPFDSFEEIVNHLIGKHKLSYEKQIGTPYQEYRLSDCGCTRCGERFAYFTNLVKHVNTAHPQNRFICDKCEMPFNKKRDLAVHFRNYHGEENYNCVQCSQNFKSLVTLRRHQNDIHFRQCKTCGNRFESVAVLRKHEVSEHPDDGNYKCRYCCKELHSAPGLRLHYGKCKVRAIASIDPKCPLISGEIRRRKLKNNLKAIRNNIQCVLNMSTATPFKYFAKYSCFYCTLKFVEFEDLRQHTMLEHPVCDVKEKYMRQCKGDRVCVKIDISSLKCKLCCMPMEDLDLLIDHLISEHKAGYDKSIKGCLDPYRIIKDSIPCPLCETVFRYFSTLQRHINSDHSNNNAICDFCGKSFNKLSNLVVHIGLAHMGATQCGICGANFKNNWCLSRHRAKHHGVKDYKCTKCPELFISSYQMQKHLIKVHNEGHKCVHCGRLFTRNSFMKDHIRRTHLKEKNIACAVCNEKFFDNYLLRLHMVKHDGERKFTCEVCGKAFLRRSNLNCHKEMHKKYGHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01490384;
90% Identity: -
80% Identity: -