Basic Information

Insect: Bombyx mandarina
Gene Symbol: -
Assembly: GCA_003987935.1
Location: NW:3418454-3436735[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.19 8.5 6.6 0.4 1 23 241 264 241 264 0.95

2 18 2.8 1.3e+02 2.9 0.1 2 23 289 311 288 311 0.91

3 18 0.0031 0.14 12.2 5.1 1 23 330 352 330 352 0.98

4 18 0.0004 0.018 15.0 2.1 2 23 357 378 356 378 0.96

5 18 0.00046 0.021 14.8 0.2 1 23 383 405 383 405 0.98

6 18 6.5e-05 0.0029 17.5 0.8 1 23 439 462 439 462 0.96

7 18 2.7e-07 1.2e-05 25.0 0.5 3 23 469 489 468 489 0.98

8 18 0.00052 0.024 14.6 4.6 1 23 495 517 495 517 0.99

9 18 1.3 60 3.9 4.0 1 23 733 755 733 755 0.96

10 18 7.4 3.3e+02 1.6 0.9 2 23 781 803 780 803 0.88

11 18 0.0069 0.31 11.1 3.9 1 23 829 851 829 851 0.98

12 18 0.00013 0.0061 16.5 0.9 1 23 855 878 855 878 0.95

13 18 0.0028 0.13 12.3 3.2 2 23 885 907 884 907 0.96

14 18 0.071 3.2 7.9 2.9 1 23 912 935 912 935 0.92

15 18 1.6e-06 7.4e-05 22.5 0.7 2 23 943 965 942 965 0.96

16 18 0.1 4.7 7.4 4.2 1 20 975 994 975 997 0.87

17 18 5.9e-05 0.0027 17.6 1.7 1 23 1003 1025 1003 1025 0.98

18 18 0.0062 0.28 11.2 1.6 2 23 1032 1053 1031 1054 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.19	8.5	6.6	0.4	1	23	241	264	241	264	0.95
2	18	2.8	1.3e+02	2.9	0.1	2	23	289	311	288	311	0.91
3	18	0.0031	0.14	12.2	5.1	1	23	330	352	330	352	0.98
4	18	0.0004	0.018	15.0	2.1	2	23	357	378	356	378	0.96
5	18	0.00046	0.021	14.8	0.2	1	23	383	405	383	405	0.98
6	18	6.5e-05	0.0029	17.5	0.8	1	23	439	462	439	462	0.96
7	18	2.7e-07	1.2e-05	25.0	0.5	3	23	469	489	468	489	0.98
8	18	0.00052	0.024	14.6	4.6	1	23	495	517	495	517	0.99
9	18	1.3	60	3.9	4.0	1	23	733	755	733	755	0.96
10	18	7.4	3.3e+02	1.6	0.9	2	23	781	803	780	803	0.88
11	18	0.0069	0.31	11.1	3.9	1	23	829	851	829	851	0.98
12	18	0.00013	0.0061	16.5	0.9	1	23	855	878	855	878	0.95
13	18	0.0028	0.13	12.3	3.2	2	23	885	907	884	907	0.96
14	18	0.071	3.2	7.9	2.9	1	23	912	935	912	935	0.92
15	18	1.6e-06	7.4e-05	22.5	0.7	2	23	943	965	942	965	0.96
16	18	0.1	4.7	7.4	4.2	1	20	975	994	975	997	0.87
17	18	5.9e-05	0.0027	17.6	1.7	1	23	1003	1025	1003	1025	0.98
18	18	0.0062	0.28	11.2	1.6	2	23	1032	1053	1031	1054	0.91

Sequence Information

Coding Sequence: atggcttttggtattattaataatttaatttcacagcCAAATGTCTGTAGGTGTTGTCTATCTGCTAGCGGCGAGTGGGATATAACGACGTCTTATTTAAGTGCGGACggaaaaaaagaagtttattcTGAAATACTAAAGGATTGTTTCGGGATTTCTctatcgatcataaaaaatataagtctGAGTTTGCGAGTTTGTCAACTATGCGTGGAACACCTCCGTGAGGCGATTTTGTTCAAGAAACAAGTTCTAAATGCTGAAAAAGTTTTCAAGCAATATTACGaacaCATTACAGATATTCATCGAGATATAGCAAAACCTTTAGGAAATACTCTAAACGAggataacaatttaatatgcAGCGTGGACTCTATTGAAGGCAGCGATTTGCAAAGAAAACCCGATTCACTTAATATTTGCAAGAGAGGCAGTGAAAGAGAATCGAATGGGCACATAGttgatgatgatgttgatgatgatgatgatgaagagacACCCATATCGGAACTCGTGAAGAGGAATTCGCATTTCAAAATACAAGATGAGACTTCAAAACATATTGACCCTAAAGTTGAGAGGCGTAGAGTCCAAAACTTATgtCAATATAAAGTACAGAATTCCGTTAAGGAGCTATCGGAACGGAAACGACTCATCGTAACTTGCGAGACGGTCCTCAAGTGGACAACCGCTTGCCCCTTCCGCCACCACAAAAGCTGGTTCCAGTGCTTCTACTGCACCGAGGACTTCATGGAGATCGCGAAGCTTCGCGAGCACACGGCCAAAGCCCACAATAACACAGacgacgaattaaaaaaaattaaacgctTCCCTAGATCATTGCAGATCGACATATCGAATCTCAAATGTTGCGAGTGCGAATTAAATTTAGTTGACGTCGAAGCGATGCGGCGTCATCTCGCCGAAGCTCACAACCGGGTTCTGTACAAAGAATGCATAGCCGATTACAAAGTGAACACCAGTCCTTACACTTGCCACTTGTGCGGGAAACGGTACCACGTGTTCCGTAGTCTGACCACGCATCTGAATGTGCACTACGCGAATTGCGTTTGTGATGTGTGCGGGAAATCTTTTATGAACACGAAACGGCTTAAGGTCCACAGGGCGACCCACGAGAATGGCCACTATCCCTGTTCCGAATGTGGGAAGGTTTTGAAAACGAAAATATCGAAAGCGAACCACATGGGTACGCACGCGAAGCGCGTCCTAAAATGCCACATCTGCTTCGAACCGATGAAGCACTACAACGATCGTCTGAAGCACATGTCCGAGCGGCATAATGTGACGCACAAGTTTGTGTGCCCGGTTTGCGGGAGGGAGTTCAATCTGAAGCATTATCTGGCGACGCACGTGCGGCAGACTCACGGGAATAGAAACAAGGCGTGCCCGGATTGCGGGATGACGTTCAAGACGAATTACGGGCTTAAGAAGCACATGCTGAGGCACTCTGGGATCAGGGCCTTCAAGTGCTCGGTGTGCTGTAAGACGTACGCCAGGAGTTATACGTTGAGGGAGCACTTAAGGACCCACGAGAGCGAGGGGGTCGCGACTCTAACAATTAATACTATGGCTGAAGCTGAAATACAGATGCCGCATTACATAGATACAGATGAAAATGTAGGAAGTCGCACGATGAGCGTTTGCTGCTGTTGTCTGGAATTGGTTTGTAGGAAGTGTCTTTGGACTGAATACACCTGGATGGGGCAAGTAGAGGTGTACGGTAACATGATTAAAGACTGCTATGGGATTGATATACCCGGGGAAAGTAGAGGCATCTGCGAAGTGTGCATAACTCAGTTGCGGAATGCAGTACGATTTAAACGACAATTGATCCTGTCCCAGGACAAATTGATTGCTCTGAAAAATAATATCGCAAAAGGCAATGAATTTGATCTTGTCGATGGTGATTCGAAGGGAAACGCGCATTACGGGAATGAGTTCGATGGGGATGATTGCGTGATCGGATGCAAACAGGAATCTGTAAATTATTCAGATTCGGATAGCTCTGATGACGCGCCTCTGGTGCAAGCCTTGGACCGAGAGCGAGGCCGAAAAGAAACTCCGCCTAAACTGAGAAGTGGAAGACGACAGTACAATTACATGAAAACGAGACGTAACGTGTGCCTTATCTTAGAGAACTCCACGATCCTACCGTTCAAATCGAACAAGGGCTACTTCACTTGCTTCTACTGCCACAAGCAGCACGCAGTCTTTGAGGAGCTCAAAGTACACATGAGCGAACACAAAGACTTGACGGTCAAAGACAGCTTGAAATGCCTGTTACGGCCGCACGCCATCAAAGTAGACGCCAGCAATTTGTCGTGCAAGCGATGCGGCCAAGCTCAGCAGACGATGCACGATTTGATACAACACTTGACCGAGAATCACGAAATCGACTTTGACTTCGACGCGAAAATGAAACCGATCGACACGGTCCTACCGTACGATCTGGCCGACGGCAAATTCCGTTGTTTCATATGCAAGAAGGATTTCATGTTCTTTAAGACCTTATCGAAGCACATGAACGAACACGGTGCGAACTACGTATGCGATAAGTGCGGTAAATGCTTCATTTTGCCGGAGAGGCTGAGGGCTCACAAGCAGAACATACACATAGATGTCTCGGCCGTGAAATGCGAGCACTGCGGGAAGCTGTGCTCTTCTAACGTTGTCCTAAAGAGTCACATACGATACACTCACAAGAGGATATTGTTCGTTTGCTCCATATGCGATAAGAAATTCATGTCGTTCAAGAAACGTTTCGACCACTTACAGCAGTACCACGGCAGGGCGGCCCTGAACCTGACCTGCGATAAGTGCTCGAAGAGTTTCTCGACGCCCGGCAGTCTGAACAATCACGTTCGGAAGGAGCACTCGACAACAACGAGGGACCCGAAGAGGTTTCACTGTGAATTGTGCTCTATGACGTTCAAGACAAAGTCCGCGTTGAAATGTCACAGCGTTGTGCATTCCGGCGAGAAGAATTTCGAATGTGAAGTCTGCCACAAGAAGTACGGAAGGTCGAGGACCTTGGTCGAGCACATGAAGATACACAGGAACGACAGGAGATGGTCCTGTGCTGCATGCGCGCAGGCCTTCGTTCAGAAATGCAGCCTCAAGAACCACATCAGGGTCCACCACGGAGAACTCAACGGGGATCAGTTATTGATTTACAAGGAACCGGAGAAAACGTGA
Protein Sequence: MAFGIINNLISQPNVCRCCLSASGEWDITTSYLSADGKKEVYSEILKDCFGISLSIIKNISLSLRVCQLCVEHLREAILFKKQVLNAEKVFKQYYEHITDIHRDIAKPLGNTLNEDNNLICSVDSIEGSDLQRKPDSLNICKRGSERESNGHIVDDDVDDDDDEETPISELVKRNSHFKIQDETSKHIDPKVERRRVQNLCQYKVQNSVKELSERKRLIVTCETVLKWTTACPFRHHKSWFQCFYCTEDFMEIAKLREHTAKAHNNTDDELKKIKRFPRSLQIDISNLKCCECELNLVDVEAMRRHLAEAHNRVLYKECIADYKVNTSPYTCHLCGKRYHVFRSLTTHLNVHYANCVCDVCGKSFMNTKRLKVHRATHENGHYPCSECGKVLKTKISKANHMGTHAKRVLKCHICFEPMKHYNDRLKHMSERHNVTHKFVCPVCGREFNLKHYLATHVRQTHGNRNKACPDCGMTFKTNYGLKKHMLRHSGIRAFKCSVCCKTYARSYTLREHLRTHESEGVATLTINTMAEAEIQMPHYIDTDENVGSRTMSVCCCCLELVCRKCLWTEYTWMGQVEVYGNMIKDCYGIDIPGESRGICEVCITQLRNAVRFKRQLILSQDKLIALKNNIAKGNEFDLVDGDSKGNAHYGNEFDGDDCVIGCKQESVNYSDSDSSDDAPLVQALDRERGRKETPPKLRSGRRQYNYMKTRRNVCLILENSTILPFKSNKGYFTCFYCHKQHAVFEELKVHMSEHKDLTVKDSLKCLLRPHAIKVDASNLSCKRCGQAQQTMHDLIQHLTENHEIDFDFDAKMKPIDTVLPYDLADGKFRCFICKKDFMFFKTLSKHMNEHGANYVCDKCGKCFILPERLRAHKQNIHIDVSAVKCEHCGKLCSSNVVLKSHIRYTHKRILFVCSICDKKFMSFKKRFDHLQQYHGRAALNLTCDKCSKSFSTPGSLNNHVRKEHSTTTRDPKRFHCELCSMTFKTKSALKCHSVVHSGEKNFECEVCHKKYGRSRTLVEHMKIHRNDRRWSCAACAQAFVQKCSLKNHIRVHHGELNGDQLLIYKEPEKT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -