Bman012311.1
Basic Information
- Insect
- Bombyx mandarina
- Gene Symbol
- -
- Assembly
- GCA_003987935.1
- Location
- NW:483148-487274[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.078 3.6 7.8 0.4 5 23 350 368 349 368 0.96 2 12 0.0093 0.42 10.7 0.0 3 23 376 396 375 396 0.97 3 12 4.2 1.9e+02 2.3 0.3 3 23 405 425 403 425 0.85 4 12 5e-07 2.3e-05 24.1 0.7 2 23 431 452 431 452 0.98 5 12 0.00012 0.0052 16.7 2.7 1 23 458 480 458 480 0.98 6 12 3.1e-05 0.0014 18.5 0.4 1 19 484 502 484 505 0.96 7 12 0.00016 0.0074 16.2 0.2 1 23 538 561 538 561 0.95 8 12 0.015 0.67 10.1 0.1 3 23 570 590 569 590 0.98 9 12 1.9e-05 0.00084 19.2 0.3 1 23 601 623 601 623 0.98 10 12 6.2e-05 0.0028 17.5 4.5 1 23 629 651 629 651 0.98 11 12 0.0013 0.058 13.4 0.3 3 23 659 679 657 679 0.98 12 12 1.6e-05 0.00072 19.4 0.8 1 23 685 708 685 708 0.96
Sequence Information
- Coding Sequence
- ATGGAAACTTCGTGGTTGAATTTGTGTCGATGTTGTTTGTCCGTTGATTGCAATGTGTCACTTTTGGACACTGAACAGAGAGTACATCAAAAATTTTTCGAAGTTACGAGCTTGAAGATATCTGCTGATGACGGGCTACCGCAAAAAATCTGCAAAGAGTGTCTTACCCTTATGAACTTTGCATACAACTTTCGCACTCAATGCCTCAAAATGGATAACGAACTTCGGATACAACTCAAAGCAATGCTCAATGTAAGCAGTGAAGATTACTTTAATGATGAATCTGGTGATTTTGTTAATAGTGCCACCAACACTACAGATGATCCAGTGAAACAGCTAGAGACAGTCATCAAACAGGAGCAAAATGATAGCGATGATGAATGTTACTATGTTCTAGTCATTGACAGTCCTAAGAGTGATGAAgagaaagaaaatgaaaatgttaatatgCCTAAAGAAGGTAGCAATCATGAAGTCAAACAAGTAAAACTTGAGTATAGTGAAGATACATCAAACTCTGTAAAAGACGAAATACACGCTACACAAAATCACTTTGAAGActcaatccatcaatttcttatgAACGACAGAGTTCCAGTTAATGTTCCAGCCACAATACTCGAAAACGAGGAGGAAAGCCAGGATAATGAGTATGAGTCAATGAACATAGATGAAACTCAGGATAGTGCATCTCAAGACTCTAATCATCAACAAATAACTGAAGTTGAAAATTTGACACATATCAATGAAGAACTAATTACTGATGATATGATGAAAGAtcctaaaaacataattaaaattctaacAAGCACTGGGTCTGATGGTACTATACTTTTAAAGAGTGATAACGGAGTTCAGTATTTAGCTGAAACACAGCTGGTGAATGATGAAGAAGATGGTGATGGGACATCACAAGAAGTAATCTTGTGTGAGGGTGAATCCCAGTTTCAAATACTGAAGTATGATGGTTCAGAACTTGTGATAGAATATGCTGATGACAGTCAAATTGCAACTGTTTTACAGCAAGAAGATGGATCATTCTTATGTGACTGTGGAGAACAATTCCAAGACTTAACAGAATATGAAAAGCATCAATATAAACATAACCCAGCCGGTGAGAATCTATGCAACTTGTGTGGAAAAGGTTTTGAATCGCCAGAAATTTTGACAGGGCACATGCTCCTTCACAGTGTGACTGGAGTGCTCATTAACTGTCCATTCTGTAATCAACTAATCAAAAGGACAGCCTTAACGCAACATATTAAGTACGGACACAATAACATCAAGCCACGGTGCAATATATGCTTGAAGACATTTGCAAATCCGAATAATTTGAAACGTCACATGATGATACACAGCGATATCAGGGAGTTTGAGTGCGACATCTGCTTTAAAAAGTTTCGCCAAAAAATCACAATGCAAACACATAGATTGACACATGTCCATCCGTTTACATGCTCGAACTGTGACAAAACTTTTCCCACAAGAGATGCTCTAAATAATCACAATGATTCCGGAGAGTGCTCCAAATCAAAAGTCATTAAAGTCAAAGCAGAGCTAATGAAAACCGTTAAACAAGAAGTTACAACTAACCTAGGGAAGTTGCTAGGGTATGCCTGTTCGCTATGCAAGAAAATGTTTTCAGTAGAGTCAGCATTGGAACAGCATGTAGAGAGTACCCACATAATTAATCCGACTGAACTACTTTGTTCAGAGTGCGGGGAGGTGCTACCCTCAAAAAAAGATATGCAGATGCATTCCTTGACCCATAAAAACTCAAAATCGAAGAGCATGAAACGCTTTGAGTGCAGCATATGCGGTAAAGGATGCGCTAGCCAAGCTATGTTGCAAATGCATGAACGCGTTCATACAAACGAGAGGCCCTTCCCGTGTCAGCTGTGTTCTTTGAGATTTAAAACCAAAACTCATTTGAGAACACATCAGCTGACACACACGAGGGAGAAAAAATTTGGTTGCTCCATTTGTATGAAATTCTTTGCACTTAAAGGTAATTTAGTTGTTCACTTGAGAACGCACACCGGTGAACGCCCATATGTCTGTTCATTATGCGGGGAAGCATTCATAGAttctaaatatttgaaaaagcaTAAATTGAAAAAGCACACCATAGAAAACGTATCACTGAATCAATATGAAAACAATCAATAtgctattaaatttgtttaa
- Protein Sequence
- METSWLNLCRCCLSVDCNVSLLDTEQRVHQKFFEVTSLKISADDGLPQKICKECLTLMNFAYNFRTQCLKMDNELRIQLKAMLNVSSEDYFNDESGDFVNSATNTTDDPVKQLETVIKQEQNDSDDECYYVLVIDSPKSDEEKENENVNMPKEGSNHEVKQVKLEYSEDTSNSVKDEIHATQNHFEDSIHQFLMNDRVPVNVPATILENEEESQDNEYESMNIDETQDSASQDSNHQQITEVENLTHINEELITDDMMKDPKNIIKILTSTGSDGTILLKSDNGVQYLAETQLVNDEEDGDGTSQEVILCEGESQFQILKYDGSELVIEYADDSQIATVLQQEDGSFLCDCGEQFQDLTEYEKHQYKHNPAGENLCNLCGKGFESPEILTGHMLLHSVTGVLINCPFCNQLIKRTALTQHIKYGHNNIKPRCNICLKTFANPNNLKRHMMIHSDIREFECDICFKKFRQKITMQTHRLTHVHPFTCSNCDKTFPTRDALNNHNDSGECSKSKVIKVKAELMKTVKQEVTTNLGKLLGYACSLCKKMFSVESALEQHVESTHIINPTELLCSECGEVLPSKKDMQMHSLTHKNSKSKSMKRFECSICGKGCASQAMLQMHERVHTNERPFPCQLCSLRFKTKTHLRTHQLTHTREKKFGCSICMKFFALKGNLVVHLRTHTGERPYVCSLCGEAFIDSKYLKKHKLKKHTIENVSLNQYENNQYAIKFV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00236839;
- 90% Identity
- iTF_00236839;
- 80% Identity
- -