Bman008253.1
Basic Information
- Insect
- Bombyx mandarina
- Gene Symbol
- -
- Assembly
- GCA_003987935.1
- Location
- NW:119463-122674[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00014 0.0063 16.4 1.3 1 23 85 107 85 107 0.98 2 17 0.0011 0.049 13.6 0.4 3 23 179 200 177 200 0.95 3 17 0.00079 0.036 14.1 0.9 3 23 208 229 207 229 0.93 4 17 0.082 3.7 7.7 0.1 2 23 235 257 234 257 0.95 5 17 0.056 2.5 8.2 3.0 1 23 261 284 261 284 0.98 6 17 0.00042 0.019 14.9 2.8 1 23 290 313 290 313 0.97 7 17 0.14 6.2 7.0 0.1 2 23 320 341 319 341 0.96 8 17 9e-06 0.00041 20.2 1.3 1 23 347 370 347 370 0.96 9 17 0.087 4 7.6 4.5 1 21 419 439 419 442 0.89 10 17 1.8 80 3.5 0.0 2 23 467 489 466 489 0.94 11 17 0.0008 0.036 14.0 0.5 1 23 511 534 511 534 0.97 12 17 0.25 11 6.2 0.3 3 23 588 609 586 609 0.88 13 17 0.013 0.59 10.2 4.5 2 23 617 639 616 639 0.96 14 17 0.075 3.4 7.8 0.2 2 23 646 667 645 667 0.92 15 17 3.9e-06 0.00018 21.3 3.9 1 23 673 695 673 695 0.99 16 17 5.9e-06 0.00027 20.8 0.2 1 20 701 720 701 723 0.92 17 17 3.2e-06 0.00014 21.6 1.6 1 23 729 752 729 752 0.92
Sequence Information
- Coding Sequence
- ATGTGTGAGGACACATTAATAACGCAGACGAACGCGGTCGTTACCGAAATTAAGATTGAGTTACGCGAAGAAACGAAGGCAGGGCAAAGGGACGTACGCAGCCCTGTGAGGAAAAAACGTGTTAAAACGTCGATAGataataaaatcgaaaaacGAAACGTGATCAAAGATAAACTCCACGTTTTGAGAGAGAGCGGTACCGAATTGCTCTTGAAATCTACCCTGATACCGTTTAGATGGTTGAAAAGCTCATTCAGATGCTTCTACTGCTACGAAATATTCAAGGAGCCGAGAGATTTGAAGGCACACCAAACGACGCACCAAGATCCGGAGATAATTAAAAAGACAATGAACAAATACTGGGAGTCGGTTATTTACGTTGACGTCTCGAACATAGGATGTCGTCTCTGTTCCGAACAAATAAACGATTTAGATTCACTAATTGAACATTCGATAAGGAAACACAAAATGTCGTTCAATACTGACGTAGGTAATTGTATTAGACCGTTCAGATTGGAAGACATGACGGTGAATTGCGTGATATGCGGTAAAAACTATACAAACTTCTCGTTTCTACTAATACACACGAACAAAGAACATTTCGGGCTGTCCCCGTTGTTGTGTGACGTTTGCGGCCAACATTTCAAATCGAAGAGGCTGCTGCGAGACCACGTCGCCCAAGATCACGAGAAGAAGCCAGTCGAGTGTAATATTTGCGGCGAAACGATCGTCAGCATGACGAGGATGAGGACGCATCTGCAGAAAGCGCACAACAAGAGGTACCGGTGCCTGTTTTGCGCTGAAACATTCGAGAATCACTACAGACGCACTCGGCATATGATAACGATTCACAAGCTGAAAGAAGAGTTCAAATGCCCGCACTGTTCGCTGAGTTTTGTCTATAGGAATCGGTTACTAACGCACATACGAGAAAAGCATCTCAGGGAGAAAAACGTGATGTGCAGCGTCTGTGGCTGGGAGGGCTTCGGGAAGACCAGCTTAGGGCTCCACATGAAAAAGCACAGCGACGAACGAAATCACCCGTGCCCGTCCTGTGACAAGGCCTTCAAGACTAGGAAGAACAtgatacagcatttgaggaatATCCACCAAAAAGGACGATCGCGTTACTTTGACAAGGAATCGGCGTCCATTGTCGACGCGGAACTAGTCGAAGCCAAAAAATCATGGAGGGTGTTAGCAACGGTTCTAGAAAATTCGACAGCCATGCCGTTTAAAAGGCACGGCAATTGGCACAAATGCTTCTTCTGCGGCAAACGATTTCAAAGCGTTCTGCATTTGAGGGCCCACAACACCGAGCAGCACAACGCAGAATCGACAAACGAATTGGAAGAACTAATAACGGATCCATTCATAAATCTTGATATAACGAGTTTAAGATGCATGCTCTGCGACGCAGCGGCTGACAGTTTGGGGGATTTCATCTACCACATTCGCGAAAAACACGAGTTGAATCAGATCACATTTGTGCCTCGAAACATCTTGTGTTTCAAATTAACGGACACCGATTTTTCGTGTTTGAACTGCGGCCGAAAATTTAAACTGTTCGGCACTTTACTGTCGCACATCATAACAGAGCACAACCGCTTGGCGAGCTCCAACGAAATCATCCCTTACAAGAACGAGCTCGATGACTCTTTACACATCAGGAAACACGAATGTACATTTTGCCGTAAGAGGTTCTTAAGTAGGCGTCGGAAAGAGCTGCACGTGCGACTCGTGCATGAATCGAAAACCAACTGCCCCTATTGCGCGGAAACATTTCGCAGCACCAAAGACAAGGACGGACACATTTACACGGTCCATTCCGATGAGATAAGCTGGCAGAGCTGCGACAAGTGCCCTGCGAAATTTCGATTGCACGAGCAGCTACACAAGCACACGCGTCGGGTACATTTGAAGGAGAAGAACGTGACGTGCGAGGTTTGTGGCATGAGGTTCTTCAACAACGGGATACTGAACATGCACAAAGTGAGACACAGCGACGCCAAACCGTTTCAGTGCTCGATATGCCATAAGCACTTCGCCAGGAAAGCCGCGATGAAGCTACACATGCGAATCCATACAAACGAGAGGCgatatatttgtaaattgtgCGGTAAAGCCTTCGTTCAGTGGTCCAGTCTCCAGCTACATTTGCCGAGGCACAGCGACGAGAGGAACTTTCGGTGTATGGTCTGCGGTAAAGCTTTCAAAACGAAGAACAACTTGAAAAAGCACAGTTCAAATGTGCACGGTAAAGATAAAGTCGCTTAA
- Protein Sequence
- MCEDTLITQTNAVVTEIKIELREETKAGQRDVRSPVRKKRVKTSIDNKIEKRNVIKDKLHVLRESGTELLLKSTLIPFRWLKSSFRCFYCYEIFKEPRDLKAHQTTHQDPEIIKKTMNKYWESVIYVDVSNIGCRLCSEQINDLDSLIEHSIRKHKMSFNTDVGNCIRPFRLEDMTVNCVICGKNYTNFSFLLIHTNKEHFGLSPLLCDVCGQHFKSKRLLRDHVAQDHEKKPVECNICGETIVSMTRMRTHLQKAHNKRYRCLFCAETFENHYRRTRHMITIHKLKEEFKCPHCSLSFVYRNRLLTHIREKHLREKNVMCSVCGWEGFGKTSLGLHMKKHSDERNHPCPSCDKAFKTRKNMIQHLRNIHQKGRSRYFDKESASIVDAELVEAKKSWRVLATVLENSTAMPFKRHGNWHKCFFCGKRFQSVLHLRAHNTEQHNAESTNELEELITDPFINLDITSLRCMLCDAAADSLGDFIYHIREKHELNQITFVPRNILCFKLTDTDFSCLNCGRKFKLFGTLLSHIITEHNRLASSNEIIPYKNELDDSLHIRKHECTFCRKRFLSRRRKELHVRLVHESKTNCPYCAETFRSTKDKDGHIYTVHSDEISWQSCDKCPAKFRLHEQLHKHTRRVHLKEKNVTCEVCGMRFFNNGILNMHKVRHSDAKPFQCSICHKHFARKAAMKLHMRIHTNERRYICKLCGKAFVQWSSLQLHLPRHSDERNFRCMVCGKAFKTKNNLKKHSSNVHGKDKVA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -