Basic Information

Insect: Bombyx mandarina
Gene Symbol: -
Assembly: GCA_003987935.1
Location: NW:2218170-2278183[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 2.5e-06 0.00011 21.9 1.7 1 23 239 261 239 261 0.98

2 9 2.4e-08 1.1e-06 28.3 1.6 3 23 269 289 267 289 0.98

3 9 8e-05 0.0036 17.2 0.3 1 23 295 317 295 317 0.98

4 9 1.3e-05 0.00058 19.7 1.6 1 23 323 345 323 345 0.99

5 9 1.8e-05 0.00081 19.2 1.7 2 23 448 469 447 469 0.96

6 9 2.3e-09 1e-07 31.5 1.6 1 23 475 497 475 497 0.98

7 9 0.022 0.99 9.5 0.6 5 23 507 525 503 525 0.94

8 9 5e-05 0.0023 17.8 1.5 1 23 531 553 531 553 0.99

9 9 0.015 0.7 10.0 0.8 1 23 559 583 559 583 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	2.5e-06	0.00011	21.9	1.7	1	23	239	261	239	261	0.98
2	9	2.4e-08	1.1e-06	28.3	1.6	3	23	269	289	267	289	0.98
3	9	8e-05	0.0036	17.2	0.3	1	23	295	317	295	317	0.98
4	9	1.3e-05	0.00058	19.7	1.6	1	23	323	345	323	345	0.99
5	9	1.8e-05	0.00081	19.2	1.7	2	23	448	469	447	469	0.96
6	9	2.3e-09	1e-07	31.5	1.6	1	23	475	497	475	497	0.98
7	9	0.022	0.99	9.5	0.6	5	23	507	525	503	525	0.94
8	9	5e-05	0.0023	17.8	1.5	1	23	531	553	531	553	0.99
9	9	0.015	0.7	10.0	0.8	1	23	559	583	559	583	0.95

Sequence Information

Coding Sequence: ATGGCGCTTGCTTCTTCTGTCAGTCTTTACTATTCGATAGTACAACGGGCGGCCCGGCATTACTTGGAAGACTATTGTCACACTGaTACGGCAGCACCATACGTGTTATACAAGGATGGCGTTGAACGAGCTCCACCGGGCACACAGTGGGGCGGTGGAGTTCTGGACGGCGGCTACCAGCCCATGCAACACCAGAGCCCTGGTGGACCGTCCCCTCAGCCCGAACCGCAGTTAGCCTCTCCTGCGCCCTCGCCCTATCCACCGGCTCCTCCACCGCCGGACCCGACCGCGGCAGCAGAAGATGCAGCACAACAACTAGCTCAGCAACAAGCCCAGCAGCAGGCTCAACAAcaacagcagcagcagcagcaacAGCAGACGTCACCTGAACACATGCAAGTTGATCAACAACTACAGTCGCAGCCCCAACCGCAGCCTCCGCCGCAAGACCACCTTGATCGATCACCGTGCTTCATCCCGCAGCCCGATCTACAGCAACAGTATACACCGTACTTCAAAGAGACCAGACCGGCCAGTCATATGCTGAGTACCGGCGGCTTTCCGCTGcactatttaaaacaaaacggtGGCGTCTTATCTTTGGAGGGTCCGCTCGATCAATACGGAGCGCCAGACCTCCGCCATTTGCCTGACATAGTTCAACCTGAACCTCCAAAGCCAAGGAAGCACAACCCTAACTCAGAACTACGGCTGTTCAAGTGCTTGACATGTGGAAAAGACTTTAAACAGAAGTCGACTCTGCTTCAGCACGAGCGGATCCATACGGACTCGAGACCATACGGGTGTCCAGAGTGCGGCAAGCGGTTCCGGCAGCAGTCTCATCTGACGCAGCACCTGCGCATCCACGCCAACGAGAAGCCGTACGCATGCGTCTACTGCCCGCGCTCGTTCCGGCAGCGCGCCATCCTCAACCAGCACCTGCGCATCCATTCCGGTGAGAAGCCATATTCGTGCGGCGAGTGCGGCAAACATTTCCGCCAGAAGGCCATCCTGAACCAGCACGTCCGAACACACCAAGATGTATCACCGCATCTGATATTCAAGAACGGCACCACGCCGACTCTGTGGCCTCAGGATGTACCGTTTCCTCCCGACGAGAACAAGGAAGAGATCCAGTCGACTTTTGGAGATGCCGACGGGCAGAATGGAGAACAGCGAGGCTCATGTTTCTCACCGGGTGACACCGCTCAATATCCCGCCTACTTCAAAGATACGAAAGGCCTTAATCATACTGTGTTTGGGTCGGGTTTATCGTTGCAATATTTAAAAGGAGGAAAGCTTCCAGATGTCCTCGGCGGCCGCGCGATGCCTCTCTACGTACGTTGTCCTATCTGTCAGAAAGAGTTCAAACAGAAGTCGACTCTTCTTCAACACGGCTGCATTCACATTGAATCCCGACCATATCCGTGCCCTGAATGCGGCAAACGATTCAGGCAGCAATCTCATCTGACTCAGCATCTGCGAATCCACACAAACGAGAAGCCATATGGCTGTATTTATTGTCCACGTTTCTTCCGACAACGTACCATTCTCAACCAGCACCTGCGCATTCACACCGGAGAGAAACCCTATAAGTGCACGCAATGCGGAAAGGATTTCAGGCAAAAAGCAATTCTAGATCAACACACGCGAACTCATCAAGGCGATCGGCCGTTCTGCTGCCCAATGCCGAACTGTCGGCGGCGGTTTGCCACCGAACCGGAGGTGAAGAAGCACATCGACAACCACATGAACCCGCACGCAACAAAGGCGCGTCGGGCAGACACATCGAAGACGCCCCGCCCGCTGCCGCCAGCCGCCGCCGTGGTCAAACCAGAGCTGTACTTCCCGCAGTGCTACGCGCCACCGTTCCAGCAATTCCCGACGAGCGGAGAGTTCAAGCCGGCGGTGGGCGGCGCGTGTCTGCCGGCGCAGTGA
Protein Sequence: MALASSVSLYYSIVQRAARHYLEDYCHTDTAAPYVLYKDGVERAPPGTQWGGGVLDGGYQPMQHQSPGGPSPQPEPQLASPAPSPYPPAPPPPDPTAAAEDAAQQLAQQQAQQQAQQQQQQQQQQQTSPEHMQVDQQLQSQPQPQPPPQDHLDRSPCFIPQPDLQQQYTPYFKETRPASHMLSTGGFPLHYLKQNGGVLSLEGPLDQYGAPDLRHLPDIVQPEPPKPRKHNPNSELRLFKCLTCGKDFKQKSTLLQHERIHTDSRPYGCPECGKRFRQQSHLTQHLRIHANEKPYACVYCPRSFRQRAILNQHLRIHSGEKPYSCGECGKHFRQKAILNQHVRTHQDVSPHLIFKNGTTPTLWPQDVPFPPDENKEEIQSTFGDADGQNGEQRGSCFSPGDTAQYPAYFKDTKGLNHTVFGSGLSLQYLKGGKLPDVLGGRAMPLYVRCPICQKEFKQKSTLLQHGCIHIESRPYPCPECGKRFRQQSHLTQHLRIHTNEKPYGCIYCPRFFRQRTILNQHLRIHTGEKPYKCTQCGKDFRQKAILDQHTRTHQGDRPFCCPMPNCRRRFATEPEVKKHIDNHMNPHATKARRADTSKTPRPLPPAAAVVKPELYFPQCYAPPFQQFPTSGEFKPAVGGACLPAQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00772240;
90% Identity: iTF_01363324;
80% Identity: -