Bman011065.1
Basic Information
- Insect
- Bombyx mandarina
- Gene Symbol
- L
- Assembly
- GCA_003987935.1
- Location
- NW:17432-40476[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 2.6e-06 0.00012 21.8 1.6 1 23 84 106 84 106 0.98 2 16 1.2 55 4.0 4.8 1 23 112 134 112 134 0.97 3 16 7.1e-06 0.00032 20.5 4.1 1 23 140 162 140 162 0.99 4 16 1.2e-05 0.00055 19.8 0.1 1 23 168 190 168 190 0.98 5 16 0.0002 0.0089 16.0 0.1 2 23 206 228 205 228 0.96 6 16 5 2.3e+02 2.1 0.1 9 23 259 274 255 274 0.93 7 16 0.25 11 6.2 0.0 3 23 327 347 326 347 0.97 8 16 1.6e-05 0.00071 19.4 1.1 1 23 390 413 390 413 0.94 9 16 0.027 1.2 9.2 0.1 1 23 418 441 418 441 0.92 10 16 0.0012 0.056 13.4 0.2 1 23 499 523 499 524 0.95 11 16 0.00017 0.0075 16.2 0.1 2 23 585 606 584 606 0.96 12 16 0.049 2.2 8.4 0.0 1 23 614 636 614 636 0.97 13 16 0.63 29 4.9 1.1 2 23 644 665 643 666 0.94 14 16 0.73 33 4.7 0.3 1 23 740 762 740 762 0.94 15 16 0.0029 0.13 12.3 0.1 1 20 770 789 770 792 0.95 16 16 0.085 3.9 7.7 0.3 1 23 799 821 799 821 0.94
Sequence Information
- Coding Sequence
- ATGATCATGCTATTCAAAGGTAACAGCAGTAGGCTGGAAcatcttattgaaaaaattcaAGCCAACAAAGAAAATCACGAAGTCACTtcagaagatttaaaagAGGCACTGGGCAGCGTGGGTAGTACGGCGGGCAGCTCTTGGCCGTCTTCGACGCCGGAGCCGTCGCCATCGCCGGCATCGACTCCGACCTCCGCCGACGCCGACACCGAGCCGCCCTTTACCCTCGGTGCAACTGAGCACACACCATACCAATGCCAGTTTTGTGACAAAGCCTTCCCAAGGCTCTCTTACCTCAAGAAACATGAGCAATCGCATTCGGACCAAATGCCGTTTCGTTGTGAATTCTGCGCACGACTATTCAAACACAAGAGATCGCGCGACCGACATGTTAAGCTGCACACTGGTGATCGGAAGTATCGATGTGCACATTGCGAATCAGCTTTCTCGAGGAGtgatCATTTGAAAATCCACATGAAGACTCATGACAATCAAAAGCCGTTTCAATGCACGATTTGCAACCGCGGCTACAATACGGCTGCAGCGCTCACTTCTCACATGCAGGGACACAAACGAGACCGGGAGGGTCGTGAACAAGATCGCCGACGCCCACTTCGCTGCCCACGTTGTGGTGATGCATTTCGCCGACCTGATCTACTTCAgGGACATATGACGACAGCACATGGGATCGATGCAGCGGTAATGACGCCACCGCGCCGTGTTGCATCTCAACCACCCCCTACACTTCTGGCTTGCATTTACTGTACTCGGGACACTTTCACGAGCATGGAACAGTTACAGTTACACGTACGCGCAGCTCATTCGGCCTTACTCAACGGTGACCTTACGGGACACACAATCGATCAACCTGCACCGACAGATCTAAGTAGACGAGGACCGGAAGACGCGCCACCACTGAAGCGGCGTCGATCAGGTTCTGGAACACCACAAACCACTTTATCGCCGAGTACTTTACTTTGCAATCAATGCGATGCCGCACTACCAGATTTTGAAGCATTTCGCGCTCATCTGAAAGGACATTTAGAAGAGGGCGGGGAACTGACTCGCTCTAGTCCCGCTCCGTGTTTGCAATGTGGCTCGACTTACGCAGATGCAGCCGCTTCAGAGCGGTACCTAACCGCTCATTACTTAGCAGTTTCTTGTGAATATACTTGTCACAGTTGCGCTCGGAGTTTTTCCACACCCGATGATCTCCAGAAGCACCTTCTAGATCTTCACGCTCACCATTTATACCGTTGTTCCCTATGCAAAGAAATATTCGATTCGAAAGTAGCGATACAGgtCCATTTCGCTGTAGCCCACAGCGGTGAGAATAAAATATGGATGTGCCGTTCGTGCGGCGGGAGTGGAGGAGCTCTGCGTTCGGAAGCGGAGGGAGTAGCGCACGTGCGGGCCCGACACGGCGCCGGTGTGTCGCGGTGCACGTGCGGCGCGCTGCAAGCCGGGCCCCGTCCCGTGCGTCCGCCGCGACCTTACCGTTGTCCGGTGCCCGCCTGCACTGAAAACTTCGCCGTGCAATATCTGTTAGAGCGACACATGCAAGCGCACCATGCTTTGCCGCATCAAGTTTTAAACGGTGAATTGAGTAGAGCGAAGTCTATAGAAAATAATAACGGAACTGAGAGAATTGAGAATGAACGTTCACCGTGCACGCCTACCCCTGAAGCTGCTGGTGCAAGCTGTCCCATAAATAATGAAGATAGACGCCGTAAAAATGGAGCAGTTGCTCTGCAATGTGCTTATTGTGGCGAAAGGACTAGAAGTCGAGCAGAATTAGAAGCTCATACCAGGGCTCATTCGGGCGCGGCCGCGGCCCGacataaatgtttaatttgtgATGAAGTTTTGCCTTCAGCGGCTGTCCTTGCAGAACACAAGCTCACACATTGCAAGGTCGTTGCAGGAGACACATGCTCTCGGTGTCGCGCACGGCTTCCATCTGAGGAGTCGTTTTTGACACACATGGCACGACACCACCCGGCTCTACCGGCGCCATGCGTCGTATGTCGACAGACACTAGCTTCCGAGGCCGAGGCCCGTCTCCATGCTCGTTTCCATTTACGCCCCAGCGAGGACGAACAACGATGTGCAATATGTCTTCGAGCTCTCCCAGAAAACGAAGCAGGCGAAGGAGCGCGAGCTTGTTCCTCGTGCTACGCTCGCCACACCGCTCCTAGACCTCCACCGCCAGCTGACCACGATTGCCGACTATGCCGCCGAGCTCTTGGGTCACCTACCCGCTTACAAGCACATCTAATCGAGCACACGTTTGCTGGAATCGGTGCATTTACGTGCTATTTGTGCTCGGCTGTTTTCACAAGCGCTGCTGGCCTGCAGCGACATTTGCCAGAACATTCGGCTGCACCCAGGCCATACGATTGTGGGAGATGTGGGTTGAAATTTTTCTTCCGAGCAGAATTAGATAATCACGCATTCGTTCATATTGAAGAAGCAGAAATAGCACAAAGAGCTTTTTACGAGGCCTATGCACGGGAAGCTGCATCGGCTTGGGCAGCGCTCGCTCCTCCAGAGCCACAGCAGACGGCAACACCAGCGCCCGCTGTGGTTGAAATGAAACGAGAACCAGAAATCAAGGAAGAGCGTCATGATGAGTACATCGAAGTGTCGTCTCCTGTTCCTCCTACACCACAAGCCCCCGCTGCGACTGCGACTCCTCCGCCGATTGTGAAGCAGGAAAAACCCGATGAAGACTAA
- Protein Sequence
- MIMLFKGNSSRLEHLIEKIQANKENHEVTSEDLKEALGSVGSTAGSSWPSSTPEPSPSPASTPTSADADTEPPFTLGATEHTPYQCQFCDKAFPRLSYLKKHEQSHSDQMPFRCEFCARLFKHKRSRDRHVKLHTGDRKYRCAHCESAFSRSDHLKIHMKTHDNQKPFQCTICNRGYNTAAALTSHMQGHKRDREGREQDRRRPLRCPRCGDAFRRPDLLQGHMTTAHGIDAAVMTPPRRVASQPPPTLLACIYCTRDTFTSMEQLQLHVRAAHSALLNGDLTGHTIDQPAPTDLSRRGPEDAPPLKRRRSGSGTPQTTLSPSTLLCNQCDAALPDFEAFRAHLKGHLEEGGELTRSSPAPCLQCGSTYADAAASERYLTAHYLAVSCEYTCHSCARSFSTPDDLQKHLLDLHAHHLYRCSLCKEIFDSKVAIQVHFAVAHSGENKIWMCRSCGGSGGALRSEAEGVAHVRARHGAGVSRCTCGALQAGPRPVRPPRPYRCPVPACTENFAVQYLLERHMQAHHALPHQVLNGELSRAKSIENNNGTERIENERSPCTPTPEAAGASCPINNEDRRRKNGAVALQCAYCGERTRSRAELEAHTRAHSGAAAARHKCLICDEVLPSAAVLAEHKLTHCKVVAGDTCSRCRARLPSEESFLTHMARHHPALPAPCVVCRQTLASEAEARLHARFHLRPSEDEQRCAICLRALPENEAGEGARACSSCYARHTAPRPPPPADHDCRLCRRALGSPTRLQAHLIEHTFAGIGAFTCYLCSAVFTSAAGLQRHLPEHSAAPRPYDCGRCGLKFFFRAELDNHAFVHIEEAEIAQRAFYEAYAREAASAWAALAPPEPQQTATPAPAVVEMKREPEIKEERHDEYIEVSSPVPPTPQAPAATATPPPIVKQEKPDED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01437318;
- 90% Identity
- iTF_00236852;
- 80% Identity
- -