Bman010378.1
Basic Information
- Insect
- Bombyx mandarina
- Gene Symbol
- -
- Assembly
- GCA_003987935.1
- Location
- NW:5768462-5790838[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.026 1.2 9.3 4.5 1 23 79 101 79 102 0.93 2 19 0.059 2.7 8.1 0.6 1 23 105 128 105 128 0.95 3 19 0.5 22 5.2 2.7 1 23 140 164 140 164 0.91 4 19 9.6e-05 0.0043 16.9 1.2 2 23 169 191 169 191 0.97 5 19 0.0038 0.17 11.9 2.5 1 23 198 221 198 221 0.96 6 19 9.1e-06 0.00041 20.2 2.9 1 23 226 249 226 249 0.95 7 19 0.00085 0.038 14.0 2.1 1 23 256 279 256 279 0.97 8 19 0.00041 0.019 14.9 1.5 3 23 286 307 285 307 0.98 9 19 0.53 24 5.1 0.3 3 13 319 329 318 333 0.88 10 19 0.35 16 5.7 0.5 1 23 526 549 526 549 0.95 11 19 0.08 3.6 7.7 1.7 2 23 559 580 558 580 0.96 12 19 0.0029 0.13 12.3 0.3 1 23 584 607 584 607 0.94 13 19 2.2e-05 0.001 18.9 0.1 1 23 645 668 645 668 0.93 14 19 0.00019 0.0088 16.0 1.0 1 23 675 698 675 698 0.95 15 19 0.00014 0.0062 16.4 1.0 1 23 703 725 703 725 0.96 16 19 0.00017 0.0076 16.2 0.1 1 23 736 759 736 759 0.95 17 19 0.00086 0.039 13.9 0.9 1 23 765 788 765 788 0.94 18 19 2.9e-05 0.0013 18.6 2.2 1 23 797 818 797 818 0.96 19 19 0.00054 0.024 14.6 5.2 1 23 824 847 824 847 0.96
Sequence Information
- Coding Sequence
- attgttcTTCTCCTGCAGTTACCGAACGCAACGCGAGAGGTGGACAATCTGCTAACTGAGAAAATCAAAATCATGGTCCTGACCAAGGAAGCTGTGGATAGGGAGAGAGACGAGAAGAGATCCAGTGAAACGTACATGAATTTGTTATATAAGTGTGACGATTGCGTCATCGGTTGGAATAATGAAAACGTTTACAAGAAACACTTTGAGAGGCACAATAGGTCGAACGGGCATTACCTGTGCCAGATCTGCACTCAAGTGTTCAAAGGCCACTCGGAGTACCTGTACCATCAGAAGAACCATCATACCAGGTACATATGCGTGGTGTGCGGGAAACGTTATCGGGGCTTGGAGTCTTGTATTGTCCACTACAACACCGAACACGGGTCGGATCGCACCTCGATACCGACTAAGGAGTACTGCTGCGCCAACACCGAGTGCTACTTCACAACGAGTAAAAAAAGCGCATACACCAAGCACGTGGCGAGTCACAAGCCCAAGCCAGAATGCGGGATCTGCTACAAGCAATTCGCCAACAATCACACTCTGACATTGCACATAAGGAAGGTTCACGACAAGAAAAATCGCACGTTCAAATGTCAGCTCTGCGGGAGTGAGTATAAGAGTCGGGGGGGCTTGAAGCACCACACGTCATCGACTCATGATGTCATCAAGTACTACTGCCCGCAGTGCGGGAAGGAGTTCAACTCTAAATACACCCTCCGCAACCACGCCAAGCACTTGCACCAGGACACCGAGAAGAGATTCACCTGCCACGACTGCGGCGACAGGTTCATGCTGAAGAGCTACCTCAGGACGCACATCGAGATGCAGCATTTGCATATTGAGCACGGGTGCCGGGAGTGCTCGAAGATATTCAGGACGGAAACGCTACTGAAGAAGCACGTGAAGCGATCGCACGGAAACGTTTCGGTCGTCAGAGAGAGGATCCTTTGTCATCAGTGCGGCAAGGAGTACAGGACtgaatttcaaaatacattAGTATGTACTTATTGTCACGAGATCCTGAGGAAGATAGAACTCTTCAAGTCACAAGTGGAGGAAAGCATGCAAATATTGAATAAACAGATATTTCAtacaaacgaaaataaaataaagaaatgtaatAACTTAACGTCATCAAATGTCACcagtattgaaataaattttctaagCGAAGACACCAACGTAAAACCtggaaaaaactttgtattgatTGTGGAAGACACCAATAATGAATTTCTTGAAGAAAAACACCATATTtCGGGACGAGAAGCGATGGTGGATTTTGAAAATGGTAAATCATCACCGAACGATACAGACGTGAAGATAGAAAGCGATAGTTCCGATTTAGAGACTGCGCTGCCTTTGTCACAGATAAAAGagaaaaaacgtaaaaatgcTGTCAGGGGAATGTGTGCGATAAAGAAGACGAAAACTGAGATGACATCTGATGCCTCTCCGTACATGGACGAAAGTTACGTCGGCAAGCTGACGATGCTGACACTGACGCGTGAGGAACTGGAGTTAGAGAGAGACAGAATGAGAACGGAGGAGAACTATTTACGGTTGCCTTACAAGTGCGAGGACTGCATCGTGGGTTATAATAAGGATGTTTTTCTGAAGAGACATCTGCGAGAGAGACATATCAAGAGAGAGAACGCTGATGTGATTGTGTGCGAGATATGTAAGTCGACGTTCAACGACAAAAGGTCGTACGTGCCGCACCACAGGAGACATTTCATTAGATACGAATGTAACACGTGCGGGAAGCGGTATATCGACGAACGCGCTGTGGTCAGTCACTACAATGAGAAGCACGGTGCAGAGGGCGCCACCGTCCGGAACAAGTTCAGGTGTAATATACGCGGCTGCGCTTACGAAACTCACTCGTACCGCGGCTTCGTCTACCACAGGTCGAAGCACGAGAGCTACCCTTGCGAGAAATGCGGCAAGGTCTATGGGAAATGGGTGCAGCTGCGCTCCCATATGTaCGGCGTCCACAACAAGAAGGTGACGTCGTACGCGTGCCCGCTCTGCCCAAAGCAGTACCGGCAGCGCTGCGGTCTGCGCGCCCACACGCGGGCGACCCACGGCGGCGCCCTCTACCGGTGCACTCTCTGCCTCAAACAGTTCAGCACTGACAACAACCTGCGAAGGCACCTCGCCGGACACTCGCGTCACGCCGCCCTGCAACCCAACAGGTACACGTGCGATAATTGCGGTGCGAAGTTCCCTACGAAGTCTCGTCTGAAGGGGCACATCGAGTGGGTACATTTGAAGATATCGAACCACCGATGCAACATTTGTCTGAAGATGGTTCGTACAGCAAGGTCGCTGAAAAACCACATAGCCTATGTCCACGAAAAGCAGAAGGTGCCCAGGGACCACATCTGCGATTACTGCGGCAAAGCGTTCACGCGCCGTTCGCTCAAGTCCCACATGGATACGCACACGGGGGCGCGCCCGCACCGCTGTACGCACTGCGGCGCCGCATTCACGCATTCCGCGACGCTTTACAACCACAAAAGACTTCTACACAATGCGGGGTCGCGTCAGACTAGTGCGCCGTGA
- Protein Sequence
- IVLLLQLPNATREVDNLLTEKIKIMVLTKEAVDRERDEKRSSETYMNLLYKCDDCVIGWNNENVYKKHFERHNRSNGHYLCQICTQVFKGHSEYLYHQKNHHTRYICVVCGKRYRGLESCIVHYNTEHGSDRTSIPTKEYCCANTECYFTTSKKSAYTKHVASHKPKPECGICYKQFANNHTLTLHIRKVHDKKNRTFKCQLCGSEYKSRGGLKHHTSSTHDVIKYYCPQCGKEFNSKYTLRNHAKHLHQDTEKRFTCHDCGDRFMLKSYLRTHIEMQHLHIEHGCRECSKIFRTETLLKKHVKRSHGNVSVVRERILCHQCGKEYRTEFQNTLVCTYCHEILRKIELFKSQVEESMQILNKQIFHTNENKIKKCNNLTSSNVTSIEINFLSEDTNVKPGKNFVLIVEDTNNEFLEEKHHISGREAMVDFENGKSSPNDTDVKIESDSSDLETALPLSQIKEKKRKNAVRGMCAIKKTKTEMTSDASPYMDESYVGKLTMLTLTREELELERDRMRTEENYLRLPYKCEDCIVGYNKDVFLKRHLRERHIKRENADVIVCEICKSTFNDKRSYVPHHRRHFIRYECNTCGKRYIDERAVVSHYNEKHGAEGATVRNKFRCNIRGCAYETHSYRGFVYHRSKHESYPCEKCGKVYGKWVQLRSHMYGVHNKKVTSYACPLCPKQYRQRCGLRAHTRATHGGALYRCTLCLKQFSTDNNLRRHLAGHSRHAALQPNRYTCDNCGAKFPTKSRLKGHIEWVHLKISNHRCNICLKMVRTARSLKNHIAYVHEKQKVPRDHICDYCGKAFTRRSLKSHMDTHTGARPHRCTHCGAAFTHSATLYNHKRLLHNAGSRQTSAP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -