Basic Information

Insect: Bombyx mandarina
Gene Symbol: -
Assembly: GCA_003987935.1
Location: NW:620961-631793[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.039 1.8 8.7 0.9 2 20 160 178 159 180 0.93

2 11 1.9e-05 0.00088 19.1 2.2 1 23 200 222 200 222 0.99

3 11 2.5e-07 1.1e-05 25.1 4.0 1 23 230 252 230 252 0.98

4 11 1.1e-06 4.9e-05 23.1 3.4 1 23 258 281 258 281 0.97

5 11 8.4e-07 3.8e-05 23.4 0.9 1 23 287 309 287 309 0.98

6 11 8.4e-06 0.00038 20.3 0.4 1 23 315 337 315 337 0.94

7 11 0.00036 0.016 15.1 6.6 1 23 343 365 343 365 0.98

8 11 2e-06 8.9e-05 22.3 0.1 1 23 371 393 371 393 0.98

9 11 0.0024 0.11 12.6 5.9 1 23 399 421 399 421 0.97

10 11 1.3e-06 5.7e-05 22.8 1.1 1 23 427 449 427 449 0.99

11 11 0.0065 0.29 11.2 0.3 1 20 455 474 455 477 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.039	1.8	8.7	0.9	2	20	160	178	159	180	0.93
2	11	1.9e-05	0.00088	19.1	2.2	1	23	200	222	200	222	0.99
3	11	2.5e-07	1.1e-05	25.1	4.0	1	23	230	252	230	252	0.98
4	11	1.1e-06	4.9e-05	23.1	3.4	1	23	258	281	258	281	0.97
5	11	8.4e-07	3.8e-05	23.4	0.9	1	23	287	309	287	309	0.98
6	11	8.4e-06	0.00038	20.3	0.4	1	23	315	337	315	337	0.94
7	11	0.00036	0.016	15.1	6.6	1	23	343	365	343	365	0.98
8	11	2e-06	8.9e-05	22.3	0.1	1	23	371	393	371	393	0.98
9	11	0.0024	0.11	12.6	5.9	1	23	399	421	399	421	0.97
10	11	1.3e-06	5.7e-05	22.8	1.1	1	23	427	449	427	449	0.99
11	11	0.0065	0.29	11.2	0.3	1	20	455	474	455	477	0.93

Sequence Information

Coding Sequence: atgttgGATATCAATTTGACTTGTCGTACTTGTATGAAAGAAAAtgtaactttaattaatttgtatgaAAAAGTGAAAGCAGAAGAAAATATTTCCATGCAACTTAGTGAAATGCTTCAGAAGTGTACAAATACACGGaTGCAGGAAGGAGATGGCCTCCCTCAAAAACTCTGTGACAAATGTGTGATgacattaaaaatgatttacaCATTTCAAAAACAAGTAATAAAAGCTGAAGAGGAGTTCAGAAAACTGTTAAGAATTCAGCTCGATGTGAAGCATGAACTGCCCGATGATACTTACAGTTTAAAACTTGAGAATGACCTTGAATGTTACGCTACACAAAATGATTTTGGTTTAAATATATTACCTAAAGATGAAGACGGAGCAGACAATAGTAACTTCAGCTTTTTAGATAGTGAATTTAAGGATGAATTTAAAATACGAAATTCTCcaccaaaaaagaaaaaaaggcagACATGTCTGCATTGTCAGAAAGTATTTTTCAAAAGGAAAGTATATGAAAAACATATTGgagtatgcataaaaaaaacattagatatAAAGACTGAAAGTCATTCTGAAAATCAAGAAGTATACCAGTGTCCGAACTGTGATGTATCATATTCGAAACACCGATCTCTGGCCATGCATATGAAGAAACATAAAAACTCGAATTTTCAGAGTTACATCTGTAATATTTGTTCTAAAAGTTTTACATATAAACATTTACTACGTAGACACATGAAGATTCATGAACAAAAGAGGCAATATGAATGTGGAGAGTGTCATAAATCATTTGTAAGGAAAGACCATTTGACTACCCATGTAATGAGTAATCATGGTGCTTTAAAACCTTACATCTGTCCAATATGCAGAAAAGattTCCCTCAGCAGTGCAACTTAAAAGACCATATAAGAATACATACCGGTGAAACCCCATTCTTGTGCTCGGAGTGCGGGAAGGGCTTTGCTAATGTCTCTAATCTACGGCAGCACGTGTTTCGTCACGCCGGAGTCAAACCATTTACCTGCAACTCCTGTCCCAAATCATTCTGTACTaaagGACAATTGCAGTGTCACATGTCAACCCACACGGGCCTGCGTCCTTACAAATGTGAAGAGTGTGGCTCTGCGTTCACCAAGCCAGGCTCCTTGAAGAAACATTTGATAATACACACTGGTATAAAACCATACGCCTGCGAATCCTGCAACAGAAGgTTCACATGCAAAGACCACCTGAAGCGGCACGAGCGCATCCACACCGGGGAGAAGCCGTACCGCTGCACCATGTGCGAGCGCGCCTTCACGCAGAGCAACGACCTGCTCAAGCACGTGCGCTCACACGTCGGACAGAACATATACCAGTGCACAATTTGCGGGGACAAGTTCAGGTTGGCGAGAGAACTGAAACTGCACTATCCAGTCCATTTCGGAGGGCATCAGCCCGATGATCATCAGGGAAGCCAATTGTCCGACCCAAAGGCGCAGGCAGCCGGAGATATCAGCGAAGTACCAAAGAATGATGACCCCGCCTACACAATACTGATACACAGTTGCAACCCCGGGGATATTAGCATTAACGTCAACACCGACAAGaattaa
Protein Sequence: MLDINLTCRTCMKENVTLINLYEKVKAEENISMQLSEMLQKCTNTRMQEGDGLPQKLCDKCVMTLKMIYTFQKQVIKAEEEFRKLLRIQLDVKHELPDDTYSLKLENDLECYATQNDFGLNILPKDEDGADNSNFSFLDSEFKDEFKIRNSPPKKKKRQTCLHCQKVFFKRKVYEKHIGVCIKKTLDIKTESHSENQEVYQCPNCDVSYSKHRSLAMHMKKHKNSNFQSYICNICSKSFTYKHLLRRHMKIHEQKRQYECGECHKSFVRKDHLTTHVMSNHGALKPYICPICRKDFPQQCNLKDHIRIHTGETPFLCSECGKGFANVSNLRQHVFRHAGVKPFTCNSCPKSFCTKGQLQCHMSTHTGLRPYKCEECGSAFTKPGSLKKHLIIHTGIKPYACESCNRRFTCKDHLKRHERIHTGEKPYRCTMCERAFTQSNDLLKHVRSHVGQNIYQCTICGDKFRLARELKLHYPVHFGGHQPDDHQGSQLSDPKAQAAGDISEVPKNDDPAYTILIHSCNPGDISINVNTDKN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00236830;
90% Identity: iTF_00236830;
80% Identity: -