Bman005093.1
Basic Information
- Insect
- Bombyx mandarina
- Gene Symbol
- zfh1
- Assembly
- GCA_003987935.1
- Location
- NW:3900006-3904494[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 6e-05 0.0027 17.6 0.2 1 23 8 30 8 30 0.98 2 16 9.2e-05 0.0042 17.0 0.4 1 23 35 58 35 58 0.95 3 16 0.0078 0.35 10.9 0.6 2 23 65 87 65 87 0.93 4 16 0.0062 0.28 11.2 5.5 1 23 94 117 94 117 0.97 5 16 3.4e-05 0.0015 18.4 4.8 2 23 124 145 123 145 0.96 6 16 4.7e-05 0.0022 17.9 1.7 1 23 151 173 151 173 0.98 7 16 0.0074 0.34 11.0 2.4 1 23 306 328 306 328 0.97 8 16 0.034 1.5 8.9 0.3 2 23 354 375 354 375 0.94 9 16 0.094 4.3 7.5 0.6 1 20 396 415 396 418 0.93 10 16 0.0022 0.099 12.7 1.5 1 21 422 442 422 444 0.95 11 16 0.00027 0.012 15.5 0.3 1 23 449 472 449 472 0.95 12 16 2.8e-05 0.0013 18.6 0.5 2 23 479 501 479 501 0.97 13 16 0.00068 0.031 14.2 1.8 1 23 508 531 508 531 0.98 14 16 0.032 1.4 9.0 7.0 2 23 538 559 537 559 0.96 15 16 4.4e-07 2e-05 24.3 1.9 1 23 565 587 565 587 0.99 16 16 0.0038 0.17 11.9 0.1 2 23 591 613 590 613 0.91
Sequence Information
- Coding Sequence
- ATGAGCGTCCACTTCAACAATTACAGCTGCGAGATTTGCGGCTCGGTGTTCATGACCCTGAGGCTGCTGAAAAAGCATCTGGAGGTGCACGAGACCGGCAACTTTCCTTGCGACAAATGCAGCAAAGTTTTCAGCACGCCGTACAAGAGGACCGTTCACGTGCGCGGGGTGCATCTGAAGCAGTTCCCGCGGAGGTGCCCCTTCTGCCCGGAGCGATTCAATTCGAATTACAAGCGGACGATCCACCTTCAGGACGTACACAATCAGTCGACGCGCGTGCACAAGTGCGAGACCTGCGGCCGCGGCTTCAATTTGAAGTATCACCTGATCTGCCACATCCGATCGGTACACCTACAGGAGCGGAACCAGCAGTGCGACGTGTGCCACCAGAGGTTCTGCAACAAGGAATCGCTGAAGAGGCACATGGTCATACACACGGGCGAGAAGAATCACAAATGCGATATATGCGGAATGGCTTTCCTCAGAAGGAAAAATTTGAAAGACCATTTGAGGTTGCACGAGATAGGTTCAGTCCAGAAATCGTGTCCAGAGATCGTTGAATCGGATTCAACTATGACGATTAGGGATGACGATGGTACAGACGTAACTCTGACCGTGTTGAAGACTCCTATATCGCTGGGCACCTTAAAACCCGAGAACAGAAAAAATACGACGCAGAATATTCGTGAAGAACCCAAGAATATCAATAAAATGCTGGTTTTGAAGGAGCCTCTGTCGCTAGATCGAATCGATTGGGATAACCTCACCGAAGTCACGTTTAACGTGAAAACAGTGGAGGAGCGATACGTTTGTAAACAAAAGAAGCGCGATAAAGAATCGAAAGAATGGATAAGAAGCAGTATGAGCATCTTCGATAATACCTATACGTATCCGTTCGTGCACACGGGCGGTCGATACAAATGCTTCGTTTGTAGGAAAACGTTTTTCGAAACCAATTCGCTGCGAGACCACACGCTCGAGCACAAGTCCGAGGACCTGGAGAAGGAACTGCAAACCAAACAGAGCGACGTCAACATCAAAATTGACGTATCGAACGCGCAATGTAAACTGTGCGACCTAAAGTTTGGCGGTTACAAGGAATTGAAGCTTCATTTGGTCGAGCACGGCCTGGCAGTAAATCTAACCGAGGACAATCTTATACCGTTCAAACTGAATTCGGACGTGTTCGAGTGCCAAGTCTGCGGAGAGGGCTTTCTGAAGCTTCGGCTACTGATCGTGCATATGAGCTGCCATTACAATAATTACAGCTGCGAGATATGCGGGTCGGCGTTCATGTCGCTGCGTCTACTGAAGAGGCATCTACAGTGCCACCAGACCGGCAACTTCCCGTGCGATAAATGCGACAAGGCCTTTAGTAGCGCCACGAAACGGACTCTGCACGTGCGCGGAGTTCATCTAAAGCTGCTCCCGAGGAGATGCCCGATTTGCCCGGAGCGTTTCAACTCGAATTACCAAAGGACCAAACATTTGAGGATCGCGCATAACCACTCGACTGGGCTTTACCGCTGCGAGACTTGCAGCCGAGAATACGATCTCAAATACCATCTTTTATTGCACATCCGATCTGTACATTTGCGGGAGCGAAATCAAGAATGTCACGTTTGTCATTCGAGGTTCTTCTCTAAGTATTGTCTCTCCAGGCACATGGTCGTTCACACGGGGGAGAAGGGCTTCAAATGCGACACCTGCGGTAAGGGCTTTTCCAGGCGGAAGAATCTTCTGGAACATTCTAGAACTCACGAGGTTCAGACGTGCGCTGCTTGCGGGCTGCAGTTCGTAGATCATTCCAATTTAATTGCACACGTTAGTAATGTGCATGGTACtttgtag
- Protein Sequence
- MSVHFNNYSCEICGSVFMTLRLLKKHLEVHETGNFPCDKCSKVFSTPYKRTVHVRGVHLKQFPRRCPFCPERFNSNYKRTIHLQDVHNQSTRVHKCETCGRGFNLKYHLICHIRSVHLQERNQQCDVCHQRFCNKESLKRHMVIHTGEKNHKCDICGMAFLRRKNLKDHLRLHEIGSVQKSCPEIVESDSTMTIRDDDGTDVTLTVLKTPISLGTLKPENRKNTTQNIREEPKNINKMLVLKEPLSLDRIDWDNLTEVTFNVKTVEERYVCKQKKRDKESKEWIRSSMSIFDNTYTYPFVHTGGRYKCFVCRKTFFETNSLRDHTLEHKSEDLEKELQTKQSDVNIKIDVSNAQCKLCDLKFGGYKELKLHLVEHGLAVNLTEDNLIPFKLNSDVFECQVCGEGFLKLRLLIVHMSCHYNNYSCEICGSAFMSLRLLKRHLQCHQTGNFPCDKCDKAFSSATKRTLHVRGVHLKLLPRRCPICPERFNSNYQRTKHLRIAHNHSTGLYRCETCSREYDLKYHLLLHIRSVHLRERNQECHVCHSRFFSKYCLSRHMVVHTGEKGFKCDTCGKGFSRRKNLLEHSRTHEVQTCAACGLQFVDHSNLIAHVSNVHGTL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -