Basic Information

Insect: Bombyx mandarina
Gene Symbol: -
Assembly: GCA_003987935.1
Location: NW:3560339-3587805[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.054 2.4 8.3 0.6 1 23 367 391 367 391 0.90

2 18 0.0062 0.28 11.2 1.3 3 23 464 484 463 484 0.97

3 18 3.4e-05 0.0015 18.3 0.3 1 23 488 510 488 510 0.98

4 18 0.0019 0.084 12.9 2.9 1 23 515 538 515 538 0.93

5 18 1.4 64 3.8 0.7 1 23 544 567 544 567 0.88

6 18 0.0064 0.29 11.2 0.2 2 23 575 597 574 597 0.95

7 18 2.4e-06 0.00011 22.0 0.5 1 23 602 625 602 625 0.96

8 18 0.00032 0.014 15.3 0.8 1 23 631 653 631 653 0.97

9 18 0.077 3.5 7.8 0.5 1 23 941 963 941 963 0.93

10 18 0.089 4 7.6 0.2 3 23 991 1012 989 1012 0.91

11 18 0.0041 0.18 11.8 0.6 1 23 1034 1056 1034 1056 0.98

12 18 0.0021 0.093 12.7 0.3 1 20 1060 1079 1060 1083 0.89

13 18 2.1e-05 0.00096 19.0 0.3 1 23 1088 1111 1088 1111 0.97

14 18 0.053 2.4 8.3 1.5 1 23 1117 1140 1117 1140 0.91

15 18 1.9e-07 8.6e-06 25.4 2.5 1 23 1147 1170 1147 1170 0.98

16 18 0.0047 0.21 11.6 3.4 1 23 1176 1198 1176 1198 0.98

17 18 4.7e-06 0.00021 21.0 1.3 1 23 1204 1226 1204 1226 0.98

18 18 4.7e-05 0.0021 17.9 2.2 1 23 1232 1254 1232 1255 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.054	2.4	8.3	0.6	1	23	367	391	367	391	0.90
2	18	0.0062	0.28	11.2	1.3	3	23	464	484	463	484	0.97
3	18	3.4e-05	0.0015	18.3	0.3	1	23	488	510	488	510	0.98
4	18	0.0019	0.084	12.9	2.9	1	23	515	538	515	538	0.93
5	18	1.4	64	3.8	0.7	1	23	544	567	544	567	0.88
6	18	0.0064	0.29	11.2	0.2	2	23	575	597	574	597	0.95
7	18	2.4e-06	0.00011	22.0	0.5	1	23	602	625	602	625	0.96
8	18	0.00032	0.014	15.3	0.8	1	23	631	653	631	653	0.97
9	18	0.077	3.5	7.8	0.5	1	23	941	963	941	963	0.93
10	18	0.089	4	7.6	0.2	3	23	991	1012	989	1012	0.91
11	18	0.0041	0.18	11.8	0.6	1	23	1034	1056	1034	1056	0.98
12	18	0.0021	0.093	12.7	0.3	1	20	1060	1079	1060	1083	0.89
13	18	2.1e-05	0.00096	19.0	0.3	1	23	1088	1111	1088	1111	0.97
14	18	0.053	2.4	8.3	1.5	1	23	1117	1140	1117	1140	0.91
15	18	1.9e-07	8.6e-06	25.4	2.5	1	23	1147	1170	1147	1170	0.98
16	18	0.0047	0.21	11.6	3.4	1	23	1176	1198	1176	1198	0.98
17	18	4.7e-06	0.00021	21.0	1.3	1	23	1204	1226	1204	1226	0.98
18	18	4.7e-05	0.0021	17.9	2.2	1	23	1232	1254	1232	1255	0.95

Sequence Information

Coding Sequence: atggaaactgAAGTGAAAATGTACTTCGGGAGATGCAGATGCTGTTTGGAATatggttatttaaaatatttatggtcCGAACATAAATGGCAGGGACATACAGAGGTGTACGGCGAAATGTTAACGAAATGCTACGCTTTTTCGTGGATCCAGTTAGACTCTGAAGATTACAATCAAATCTGTGATCCATGCATAAAGAGGCTAAGGGAGTCGTGCAGTTTTAGGAATTTAGTTATAAGATCCCAGAAACAACTGATGGACGAGATAAGTAATGGCCATGAATCAACAATAAAAATTGAGTATGTAAATGAAGCAGAGAAAGACTCATCGGAGCCAGAACTCACGAGGGATACTGTGTATGAAGAAGTGGAATTTTTAGATGATGCTCCTGTTGATGTCAAACCAAAAGAGAATGTAGACAGAAAAAGAATGAGCATCAGTCCAACAAAGAGAAAACTTCCGAACAAACAAGCAAAGAACATTGACAATAGGTTAACAAAATATGTTGTGGGAGACCCAGAGAAGACTATGGATGTGTCGCgaagtaaaaaaaactcacgtATAGATACTACAAATCACAATGGGATTTCAAATAGAATGTTGACTGAGGAATTGGATGAGTATTCAGATAAACAGACTTTGGTGCCAAAAATTGAATTCTTAGAAGTGGAAAGCCAAGAAATCGTTGAAGAAATTAACAAGGATGAGGAAATTGGACTCGAGAAGAAAACATATGAAGAAGTGGAGTATTTAGAGGAAGATGTTACAGACAACAGTCAACTAGAGAAAGATCCGATAACAGTTTGCTTAACCCGGAAATGGCCCAAGAAACTACCCCGAGCCGAACGCAACAAGAGGTATCTTCAGTACACCGAGGAGGATCTGAGGAATGGCGTGGAGGCAGTCAGAAACAACAGAATGTCTAGATTAGAAGCGGCTGAATTCTATAACGTTCCGAGGAAGACTTTGGCTGCCAAACTCAAAATGGACGAGGAGAGTGTAGACCCGGCACGAGAAGAGATGTACGTATtcataaaggaaataaaaaaaatactctcatTCACGAATGCCACGCCCTACAAAAGTAAAATGTCCACCTACAGCTGCGCCTATTGCACCGAAGTGTATTTCCAAACGGCGGACGACCTCCGCAACCACACGCGCACAAACCACATCGACGAGCGAACGAAGAAGGTCGACCTCATGATGAGACCTCACGCGATGAACGAAATCTTAAAGTTAGACGTGAAAAACCTCATTTGTGTGGTCTGTTGCATCCCGATGGACGACTGGAATGGTCTATTTAGGCATTTAAAGAATACACACGGTATCGTCTTCACCTACGCGTACAAAAGGGTCATTCCGTATATCTTGGACGAGGAGCCTGACTGCGTGCTCTGCAAGCAACACTTCACGAACTATGTCCAGCTCGACGTCCACATGAACAGCCACTACGACAACTACGTCTGTGACGATTGCGGCCAGACCTTCATATCGGCTGCCAGGCTAAAGAATCACTCCAAGAAGCACGATGTTGGGAAGCACACGTGCAAATACTGCAACAAAGTGTTCGGTCTAGAGCATTACCTCAAGAAGCACGAGGCGGTCGTTCACAAAGCCAGGTTGTACTACAAGTGTTACCACTGCCCGGAGAAGCTGCCAAGCGATAGGGAGAGGAAGGAGCATATCGAAGCGAACCACAGGGAGAAAGTTAAGGAGATCAGCTGTGACATGTGCGGCAAGATATTCAATTGGCGGCAGTACTACATCGCGCATCTGAGGAAGGTCCATGGCGACAGGAAATACGAGTGCACAGTTtgcgataaaaagttttctcagAATGGAGATTTGAGTCGGCACGTCGAGTCCAGGCATAACGGCGCCAAGAACCACGTGTGTCCGATGTGCGAAAGGAGATACTCCTCGAAAGCGGCGCTGGTGACGCACTTCAAAATTCATTCGAACAATAACGAAGTTGTCgttataaattatacatGTATAAtgaccgagcgggtgatatggCTTGGTCGAAGATTATTCCTCCGTGATTATACCTACAAactgacggtccgaatgttAATGTCGAATAAGAAATACGGAGAATGCAGGTGTTGTTCAGCAAAAGGCAAACACAGAGATATTACGAAGGAATATTATCACAATGGTCTAAGAGAAGTGTTCATTGACAATTTTATCGAGTGCTTCAATTTATTTTTATCAACTCACAAACAGCTGACAACATTAATTTGTTCGAGTTGTGTATCAAGGCTCCGGGATGCATGTCGCTTCAGGAACCTAGTCGTAAATACAGAACGGAAACTTCTAGAAGCTGTTGGAGGTCAGGGGCAGCCTGTCTTTGTCAATGTTCCAGTCGATGAATCGTCACCAGACACAGAGTTTGATATAAAGGTAGAACAAAACAGTGACATAAAGGAGGAGCCTCAGGACTCAGATGATGAACTCCTCGGCCTAGATAATACTGTTGATGACGATTATGATATCGACTTGGATGTGAGAGAGGATCTGGTGGAGGGCGAGGAAGAGTTACTGGCTCGGTTCAGGAGCGAAGTTCTGGATCCACTTCCTACTAGGCACACTTTAAGACAGATATGTCCTAATTACGCCAGACATTTGGATTTGCTCAAGGGAATAACGGTATTCCCTAGGACGTTAAAGAAACTACTCAAAGAGAATGAGAGCAGGCGTCCCATGATCGCCGGCAATGTCTACATAACCGAGAAAGTGGGTCAGGTCGTCAACGCGACCACACTCTTAAAATATTCGAACATGACGCCCTTCAAAAGCAGAGGCCGGAAGGGATTCTTGTGTTTCTATTGTCCGAATATATTCGAGAGCGCAACAAAACTCCGCGAGCACACCTCCGAACACGACAAGGAACTGATTAACGGCATCCTGAAGACGTACATCACGGAGAGTTTGGTCGTGAACGTGGACGTTACCGATTTGGCCTGCACCATATGCGGTCAGTTTTTGAAGAGCCTGAACGAGATGAAATCGCATCTGACCGGCGTTCACAAGATGAAATACTACAGCGAATTCACGGATCGCTTGATACCGTTCAAGTTGGACGTGAATATGTTTGTGTGTCAGGTTTGCGAATGTAATTTCGAGACTTTCGGCGCGATCGAGCGTCACATGAACGTTCATTACCGGAATTATATATGTAAAGAGTGCGGCACGGGTTTCGTGACGAGGGCCAGACTAAAAGTGCACTTCGGGAACACGCACGTCGGCGGGGCGTTCCCCTGCGAGATGTGCGGAAAGATGTTCGTAACGCAACTCCGACTGAAGAATCATATCAATTCTGTACACAAAATGGTGAAGAGGTTCCGCTGCAATAAATGCTCGGAGCGGTTCACGGAATACGTTTATAGGCAGAAGCATCTGGAAGATGTCCACGGGGTGCCAAGCATCAAGTACAAATGTAATGTCTGCGAAAAATCGTTCAGTCGACGCTACAATCTCTCGATGCACATGAAGAGGGATCATTTGGAGGAGAAGAATTTTCAGTGCGAGCTGTGCCCCTATAAATGTTTCTCGAATAAACAGTTGAGTATGCACATGATAAAGCACAACGGGGAGAAGATTTACGAGTGTTCGGTCTGTAAAAAATCGTATGCCCGCAAGAAGACTTTGAGTGAACATATGAAGATCCACAATAATGACCGCAGGTTCGCGTGCGCAGTCTGCGGCCAGGCTTTTGTGCAGAAATGCAGCTTAAAGGGACACATGAAGACGCACCATCTCGAATATAATTtagcataa
Protein Sequence: METEVKMYFGRCRCCLEYGYLKYLWSEHKWQGHTEVYGEMLTKCYAFSWIQLDSEDYNQICDPCIKRLRESCSFRNLVIRSQKQLMDEISNGHESTIKIEYVNEAEKDSSEPELTRDTVYEEVEFLDDAPVDVKPKENVDRKRMSISPTKRKLPNKQAKNIDNRLTKYVVGDPEKTMDVSRSKKNSRIDTTNHNGISNRMLTEELDEYSDKQTLVPKIEFLEVESQEIVEEINKDEEIGLEKKTYEEVEYLEEDVTDNSQLEKDPITVCLTRKWPKKLPRAERNKRYLQYTEEDLRNGVEAVRNNRMSRLEAAEFYNVPRKTLAAKLKMDEESVDPAREEMYVFIKEIKKILSFTNATPYKSKMSTYSCAYCTEVYFQTADDLRNHTRTNHIDERTKKVDLMMRPHAMNEILKLDVKNLICVVCCIPMDDWNGLFRHLKNTHGIVFTYAYKRVIPYILDEEPDCVLCKQHFTNYVQLDVHMNSHYDNYVCDDCGQTFISAARLKNHSKKHDVGKHTCKYCNKVFGLEHYLKKHEAVVHKARLYYKCYHCPEKLPSDRERKEHIEANHREKVKEISCDMCGKIFNWRQYYIAHLRKVHGDRKYECTVCDKKFSQNGDLSRHVESRHNGAKNHVCPMCERRYSSKAALVTHFKIHSNNNEVVVINYTCIMTERVIWLGRRLFLRDYTYKLTVRMLMSNKKYGECRCCSAKGKHRDITKEYYHNGLREVFIDNFIECFNLFLSTHKQLTTLICSSCVSRLRDACRFRNLVVNTERKLLEAVGGQGQPVFVNVPVDESSPDTEFDIKVEQNSDIKEEPQDSDDELLGLDNTVDDDYDIDLDVREDLVEGEEELLARFRSEVLDPLPTRHTLRQICPNYARHLDLLKGITVFPRTLKKLLKENESRRPMIAGNVYITEKVGQVVNATTLLKYSNMTPFKSRGRKGFLCFYCPNIFESATKLREHTSEHDKELINGILKTYITESLVVNVDVTDLACTICGQFLKSLNEMKSHLTGVHKMKYYSEFTDRLIPFKLDVNMFVCQVCECNFETFGAIERHMNVHYRNYICKECGTGFVTRARLKVHFGNTHVGGAFPCEMCGKMFVTQLRLKNHINSVHKMVKRFRCNKCSERFTEYVYRQKHLEDVHGVPSIKYKCNVCEKSFSRRYNLSMHMKRDHLEEKNFQCELCPYKCFSNKQLSMHMIKHNGEKIYECSVCKKSYARKKTLSEHMKIHNNDRRFACAVCGQAFVQKCSLKGHMKTHHLEYNLA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -