Bman000908.1
Basic Information
- Insect
- Bombyx mandarina
- Gene Symbol
- -
- Assembly
- GCA_003987935.1
- Location
- NW:1419352-1431257[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.0031 0.14 12.2 1.0 3 23 207 228 206 228 0.96 2 22 0.22 10 6.4 0.3 1 22 605 626 605 626 0.95 3 22 0.003 0.14 12.2 2.1 2 22 703 723 702 723 0.94 4 22 0.42 19 5.5 0.1 2 20 731 749 730 753 0.88 5 22 0.016 0.71 10.0 0.1 3 23 774 795 772 795 0.96 6 22 0.0018 0.082 12.9 3.0 1 23 801 824 801 824 0.95 7 22 0.081 3.7 7.7 0.0 1 23 850 873 850 873 0.90 8 22 0.012 0.55 10.3 3.4 1 23 878 900 878 900 0.97 9 22 0.017 0.75 9.9 0.1 1 23 906 929 906 929 0.95 10 22 0.00067 0.03 14.3 1.3 1 23 941 963 941 963 0.98 11 22 0.00093 0.042 13.8 4.0 1 23 1013 1036 1013 1036 0.96 12 22 0.0067 0.3 11.1 1.0 1 23 1096 1119 1096 1119 0.97 13 22 0.0074 0.33 11.0 2.2 2 23 1148 1170 1147 1170 0.95 14 22 0.025 1.2 9.3 0.1 2 23 1176 1198 1175 1198 0.94 15 22 0.051 2.3 8.4 0.1 1 21 1243 1263 1243 1264 0.94 16 22 0.0001 0.0045 16.9 0.9 1 23 1274 1296 1274 1296 0.94 17 22 0.00016 0.007 16.3 0.2 2 23 1386 1408 1386 1408 0.92 18 22 1.2e-07 5.2e-06 26.1 1.1 3 23 1415 1435 1414 1435 0.98 19 22 0.0052 0.24 11.5 1.0 1 23 1454 1476 1454 1477 0.94 20 22 0.12 5.4 7.2 0.0 1 23 1499 1521 1499 1521 0.97 21 22 0.016 0.72 9.9 0.6 1 23 1527 1550 1527 1550 0.95 22 22 4.9e-05 0.0022 17.9 0.5 1 23 1558 1581 1558 1581 0.96
Sequence Information
- Coding Sequence
- atgaaTGTGAACTATGATAGTGTTTGTAGACTGTGCTTGTCAGCTCGTGGCGAATTACTGCCCAtttttcctaccaccagttccgaTGACTCTGAACCTCACGTCCTCGCTTCAAAAATTAAGGATTGCGTATCGGTTGAGaTAACCGAAAATGACGACTTGCCGACAAATGTCTGTAAGAAGTGCATGGATAATGTCAACAATTGGCATATTTTCAAGGATGTATGTGAAAGAACACAAACCAAACTGATACAGTTGATTAATAAAGATGGCAACCAACTAGAAGAGGTGAAAGTAAAAAATGAACCTCTGTCAGATGAAGCATATGATGAAGGAGTGGTTATTGATGGCTCTTACCCCGATAATGAGACCCAAAGCTCCCATAAATTACAACCGGAAGGCCCACCCATCTTGACATCGCTTGGGCTCACACCAAGGAGTGATAAGGGAGTAGAAAGCGAAAAAGATGAAGAAGATGATGAAGATGAAGACGTGAATAATGTAGCCGCGCCTCTTGCGAAAGTATCAAACATGCCTGAAGTTTCTATTACGGTTATGCGTCCCACTGGTGAGACCCTACACGCCCGCCAAGGCATTCAACAAATAGCGTCAAAAGATTGTCTTGTTTGTGGACGCAGCTACAGATACTCACACAACGCCAGGCGACATGAGTTGACCGCGCATAGTTTTGATAGGTACACTAACAAAACCACGACGAAAAAGTCTCGTACACATCTACAGCCGAAATTGAGGCCTAATCCATTTAATCCCAAGGCGCGACTTATGCCTAATCCTATCAGTCACAAAATCCAGTTCAAAAACATCCCGATCGTCAATGCGTCGAAAGCGGGTCCACCGAAACCAATTCCTATTAAAACTGTAAATTCTAAAGttacacaaaataatttacCATATCCCCTTCGTATTAAAGCACTAAAAGACTTGCAAATCAAGAAAAAAGAACCGCAAATTTTGAAAACACTCCTAACAACAAAACCGGAAGTTTTAGTTTCTGAACCAGAAATTATGAATTCGGGTCCTGAAAGTCCCGAAACTTTGATATCGGAACCAGAAATAGCATCGTTTCAGGTAGAAACTATTTTATCTGAGGCCGACCCTGATGCTTATGATCAGCAAGGTGACGACGAAGCGGAAGGTGAAGTAAATGACAGTCAAAATCAGAACTATGACACAGTAGATATGGATTCTGAAAACGAGATCGAAATTGCACGTCAGCGCGAAGAAGTGGATGACGATAAGAAACATGACGAGCAAGATAATGCAGATTATAATGAAAATCATGATGAGAATATGCAGAGTGATACCGAAAAGGATCATAATGAAGACACAGCGGACAGTCAAGAGAATCCGATGGTTGACGAAAATATTCATATAAAGTATGAAGATCATGAAGATAAAGATAATGAAGATAATCAAGATGAAAATGATGATTACGATGAAGACTATGTCCCTCCCGAAGGTCTCGCTCCCGTTGTCGAGATAAACGAGGACATGCAAACAAATTCATATCTTAGCGAAATGAACGAAGAGGAGGAGGAACTCGATGAAACAGCCCAGTCAGGTGAAGCGATTGATCCCAACGACGCTACGGTTGAAGAAGAAGAGAAACCTGCTAAGGTTTTAGACCCTGATAAAGTTTACGTGACTAAATCTCAAAgagattttataaataaacatcgCGATATAATTGAGCAAATTAACACTAAGCGATGTCTGTGCTGTGACAGAGAACATCCGCGCAGGAAAGCGGTTATACAACATCTACAGAAAAACGGGCACAAGGTTCCTAAACACACCTGCTACAATTGTGTTGTAACTTTCGGCCACATCGGCGCGCTGCTCAGTCATATGCGATCGAATTCGTGTACGGATCTGTGGAAAATAATTTACGACGAAAACGGCATCACCGACGATATCGTGATAGAGGATGAACCTGTGCCTGTGGACGTCAAAGTTCAGTATAAAGATATCTTCAATGCTAGGTCATACGCTTGCAGACTTTGCCCTGCGAAATTCCAATTGAAACAGTTTATTATGAAACACGTATTAGACGTTCACGAAGATGGACAGTCTATGATGCCACTCCACTGCGTACATTGCAGGGTAAGGTTTAAAGACAAAAATTTGTTAAAGAAACACATACGCGTCGGCGAATGCACCGTTAATATTTCTTGCGATTTGTGTGAAGAGAAATTCAGAAacatccaatattttaatgatcatGCCGTTGCTGTACATGCCGGTAACCTTGATCAGTCTGAAACCTTGACCAAGTGTGTGGACGGTAGGCCAACCGACTGTCCCGTCTGTGGAAAGAAGAACACAAACTATCCTAGTTTGGTGAAACATTTGAAAATCATACACGGCGAAGATAAACCTCATTTCTGTCAGCATTGCGATTCCAAATTTGAACAAGCCGCTGATCTAAACAAGCACATATACACGGAGCATTCGGATAGGACCTTAGGCGTTCAAAGCCATGAACCTGACATGACTCTCGTTAAAGAAGAGGCCGAAGAGTATCATTATTCATGTACTGAATGCAATGCGATTTTTGAAACAGTTGACGCATGGACTGACCACCAAGTTGCCGAACACAATCAGGTGGCACATCATTGCGATCAATGCGAAAAGAAATTTTTACGACCTTCAGAACTCGCGGAACACAAGAACACCCACTTGCGAGTGAAATTTTACCCTTGCAGTCTGTGCTCTAATTCCTACAGTACTCCGCAGAAACTTGCCGACCACGTTCAGCAAATCCATCCTGGAGCCGGGAATACCCCCACCGATGCAGAATTTTACTGCGACATATGCATCAGGTCTTTCAAAAGTCGCCAGGCGTATTCTAATCACATGCGCATTCATGCTAAAGTGCCGACGACTAATAGGAAACCGGGAGATCCTAAGAGTTTTGCTCCACAAATCATCGGGAAGCCAATTAAGTCTTATCCTGGTGTTCAACCAGGCTTTGTATCGTTTAAACCGAATTATAGTAATATCCCTAATGCTCCGTATTGTTGCGATATTTGTGGTAAAGGTTTTATGCACAAGAAAAATATTTGGAAGCATAAAAAGGTATTACACGCTGATCTCTTGAACGACAGAAATGACAGTGAAGAGAATACTATGCATGCCTCCACCGAAGAGGATGAATATAATCCAGATGAAAATGGTACGATTTTGTCGACACCGCAGTTTAATAGTTTTAACTTTGCTAATTTCAATAATACGCAGCCGACTCAACCACAACCCGAATTACCTTATTCATGTGAATTGTGCTATCAACGATTTCCGGTCAGGAATGCTTTGTGGAAACATAAGCGTAATAAACACGGAATTATTAATCCGAATATGGGCTCCGGTTCTGATAATCACACGCAGTCCACAAGCGAGAGGGGCGACACCAGTAGCAGGTCAAGTTGCACGATATGCAAAATCAATTTCGCCGATAAAAAGTCGTATTATCGTCACAGGAAGAACTTTCACAAGACTTCTGTGCAAATGTGCAAAATATGTGGCAAACCGTTGAGTTCTACGTTGGAGCTTTACGAACATCTGAAGGCTGCACACGCCCGTGAATTGCTCGGTTATAACGCCAATCAGGTCACGAGTAGTAAATCTCAAGACACCTCACAAGATGTGGACGGAGACTACGATAACGATCAAGACACCGGCGACGCGAACGTCGACTATCAAGCCAGGTATCCCTGCGAAGCGTGCGGCAAACAGTTCGTAGGACTGCTGGCTTTACAGAACCATCAGTGCGTTAATCAACTCCCCCAGCAGCCGCAGACTTTTGAATGCGAAATATGTCACAAGAGCTACACTTCGATATCAGCTCTGAAGAGCCACCGCGGTTGGCACCTTCGTTCGCCGGACGGAAAAGCTGCTGCCAATAATTCAGGCCTGTGGATGCCACAGCACAAAGTTTCCCACAAAGTCAGTAAACATGAAATCGTCGATGCCTCGCAACTGGCTCGCGTTCAACATTCGACGCCGACTCCGGCATCCGTTGCCAAAAGAAGATTGCCACCAGAGGTTGAAGTCACAGTTGTGAACCCTAATAAGAAGTTGCGATCTGACGACTCTATAGAGACAGACCAACAGAGTACAGGACCTCTTGAAGACAGATACTGTGGCATTTGCGACAAAGAGTTCACGAAACGCGCAGCCTACCAACGTCATATGGATGAGGTCCATCAACCGAATTCAGTTTTTTGTCCTGTTTGCGATAAAAGCTTCACGAGAAAGTCTACTTTGATCGTACATATGAAGAAGCATTACGAAAGCGGCGAAGGAAGTTCCTCTGCTACTGGCTTAGGAGATGAAGAGGTGCACGCTTGCGATCTTTGCGGCGCGCAGTACGATAATGCTGATGCGCTGAGGTCTCACAAAATGAGACATCACGGCGAGGAGGAATCCGGAGATTCCGAAGACGACGGTAACGGCGTGGTGGACCCTCCCGGGGAATTTACATGCGCTCAGTGTGGGGACGGGGTGGCCACCCCACGGGACCTCATCGCCCACCGAACAATGCACGCGACTCCCACCAAATTTTTCTGCAACATTTGCAAAGTATATTTTGCGAGGGCCCTAGACCTGTCCACACACACGCGGGCGCGACACTCCGACAACGAAAAGGTCTACTTCCCCTGTGCTATGTGCGACCGTTCATACATGAACAAAAAGAGTTTACAGAGACACATAGAAATGTCTCACTGA
- Protein Sequence
- MNVNYDSVCRLCLSARGELLPIFPTTSSDDSEPHVLASKIKDCVSVEITENDDLPTNVCKKCMDNVNNWHIFKDVCERTQTKLIQLINKDGNQLEEVKVKNEPLSDEAYDEGVVIDGSYPDNETQSSHKLQPEGPPILTSLGLTPRSDKGVESEKDEEDDEDEDVNNVAAPLAKVSNMPEVSITVMRPTGETLHARQGIQQIASKDCLVCGRSYRYSHNARRHELTAHSFDRYTNKTTTKKSRTHLQPKLRPNPFNPKARLMPNPISHKIQFKNIPIVNASKAGPPKPIPIKTVNSKVTQNNLPYPLRIKALKDLQIKKKEPQILKTLLTTKPEVLVSEPEIMNSGPESPETLISEPEIASFQVETILSEADPDAYDQQGDDEAEGEVNDSQNQNYDTVDMDSENEIEIARQREEVDDDKKHDEQDNADYNENHDENMQSDTEKDHNEDTADSQENPMVDENIHIKYEDHEDKDNEDNQDENDDYDEDYVPPEGLAPVVEINEDMQTNSYLSEMNEEEEELDETAQSGEAIDPNDATVEEEEKPAKVLDPDKVYVTKSQRDFINKHRDIIEQINTKRCLCCDREHPRRKAVIQHLQKNGHKVPKHTCYNCVVTFGHIGALLSHMRSNSCTDLWKIIYDENGITDDIVIEDEPVPVDVKVQYKDIFNARSYACRLCPAKFQLKQFIMKHVLDVHEDGQSMMPLHCVHCRVRFKDKNLLKKHIRVGECTVNISCDLCEEKFRNIQYFNDHAVAVHAGNLDQSETLTKCVDGRPTDCPVCGKKNTNYPSLVKHLKIIHGEDKPHFCQHCDSKFEQAADLNKHIYTEHSDRTLGVQSHEPDMTLVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCEKKFLRPSELAEHKNTHLRVKFYPCSLCSNSYSTPQKLADHVQQIHPGAGNTPTDAEFYCDICIRSFKSRQAYSNHMRIHAKVPTTNRKPGDPKSFAPQIIGKPIKSYPGVQPGFVSFKPNYSNIPNAPYCCDICGKGFMHKKNIWKHKKVLHADLLNDRNDSEENTMHASTEEDEYNPDENGTILSTPQFNSFNFANFNNTQPTQPQPELPYSCELCYQRFPVRNALWKHKRNKHGIINPNMGSGSDNHTQSTSERGDTSSRSSCTICKINFADKKSYYRHRKNFHKTSVQMCKICGKPLSSTLELYEHLKAAHARELLGYNANQVTSSKSQDTSQDVDGDYDNDQDTGDANVDYQARYPCEACGKQFVGLLALQNHQCVNQLPQQPQTFECEICHKSYTSISALKSHRGWHLRSPDGKAAANNSGLWMPQHKVSHKVSKHEIVDASQLARVQHSTPTPASVAKRRLPPEVEVTVVNPNKKLRSDDSIETDQQSTGPLEDRYCGICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLIVHMKKHYESGEGSSSATGLGDEEVHACDLCGAQYDNADALRSHKMRHHGEEESGDSEDDGNGVVDPPGEFTCAQCGDGVATPRDLIAHRTMHATPTKFFCNICKVYFARALDLSTHTRARHSDNEKVYFPCAMCDRSYMNKKSLQRHIEMSH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -