Bman005343.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Bombyx mandarina
Gene Symbol
-
Assembly
GCA_003987935.1
Location
NW:3450001-3558359[+]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 1.8e-07 0.00018 20.7 0.0 1 36 288 324 288 331 0.90

Sequence Information

Coding Sequence
atggaaattgaaGTGAAAACGTACTTCGGAAGATGCAGATGCTGTTTGGAATatggttatttaaaatatttatggtcCGAACACAAATGGCAAGGACATACAGAGGTTTACGGCGAAATGTTAACCAAATGCTACGCTTTTTCGTGGATCCAGTTAGACTCTGAGGACTACAATCAAATCTGTGATCCATGCATAAAGAGGCTAAGAGAGTCGTGCAGTTTTAGGAATTTAGTTATAAGATCCCAGAAGCAACTGATGGACGAAATAAGTAATGGCCATGAACCAGCAATAAAAATTGAGTATGTAAATGAAGCAGAGAAAGACTCATCAGAACCAGAACTCACGAGGGATAGTGTGTATGAAGAAGTGGAATTCTTAGATGTTCCTGTTGATGTCAAACCAAAAGAGAAAGTAGACAGAAAAATAATGACCACCGGTCCAACAAAGAGAAAACTTCCAAACAGGCAAGCGAAGAacattgaaaataggttaacgAAATATGCCATAGGAGACCCAGAGAAGACGATGGTTGTATCGAGAagcaaaaaaatcttacgtatAGATACTACAAATCACAATGGGATTTCAAACAAAATCTTAAACGAGAAATTGGATGAAGTTTCAGATAAACAGACTTTGGTGCCAAAAATAGAATTCTTAGAAGTGGAAAGCCAAGAAATCGTTGAAGAAATTAACAAGAATGAAGAAATTGGACTCGAGAAGAAAACATATGATGAAGTGGAGTATTTAGAGGAAGATGTCACAAATAACAGTCAACCAGAGAAAGATCCGATAACAGTCTGCTTAACTCGGCCCAAGAAACTGCCCCGGGCCAAACCCATCAAGAAATACCTTCAATACACCGAGGAGGACCTGAGGAATGGCGTGGAGGCAGTCAGAAACAACAGGATGTCTAGATTAGAAGCGGCCGAGTTCTATAACGTTCCGAGGAAGACTTTAGTTGCCAAACTCAAAATGGACGAGGAGAGCGTAGACCCAGCACGAGAAGAAATGTATGTATTCATAAAGGAAGTAAAAACAATACTCTCATTCACGAATGCGACGCCCTACAAAAGTAAAATATCGACCTACAGCTGCGCCTACTGCACCGAAGTGTATTTCCACGCGGCGGACGACCTCCGCAACCACACGCGCACGAACCACATCGACGAGCGAACGAAGAAGGTCGACCTCATGATGAGACCTCACGCGATGAACGAAATCTTAAAGTTGGACGTGAACAATCTCATTTGTGTGGTGTGTTGCATCCCGATGGATGACTGGAATGGTCTATttagacatttaaaaaatacacacggTATCGTCTTCACGTACGCGTACAAAAGAGTCATTCCGTATATCTTGGACGAGGAGCCTGACTGCGTGCTCTGCAAGCAACACTTCACGAACTACATTCAGCTGGACTTCCACATGAACAGCCACTACGACAACTACGTCTGTGACGATTGCGGCCAGACCTTCATATCCGCTGCCAGATTAAAGAATCACGCCAAGAATCACTCCAAGAAGCAAGAAGCGGTCGTTCACAAAGCCAGGTTGTACTACAAGTGTTACCACTGCCCGGAAAAGCTGCCGAGCGAAAGGGAGAGGAAGGAGCACATCGAAGCGAACCACAGGGAGAAAATTAAGGAGATCGGCTGCGACATGTGCGGCAAGATATTCAATTGGCGGCAGTACTACATCGAGCACTTGAGGAAGGTCCATGGCGACAGGAAATACGAGTGCACAGCTtgcgataaaaagttttctcagAATAGAGATTTGAGGCGGCACGTCGAGTCCAGGCATAACGGCGCCAAGAACCACGTGTGTCCGATGTGCGAAAGGAGATACTCCTCGAAAGCGGCGCTGGTGACGCACttcaaaattcatttgaataataACAAAGTTATATAA
Protein Sequence
MEIEVKTYFGRCRCCLEYGYLKYLWSEHKWQGHTEVYGEMLTKCYAFSWIQLDSEDYNQICDPCIKRLRESCSFRNLVIRSQKQLMDEISNGHEPAIKIEYVNEAEKDSSEPELTRDSVYEEVEFLDVPVDVKPKEKVDRKIMTTGPTKRKLPNRQAKNIENRLTKYAIGDPEKTMVVSRSKKILRIDTTNHNGISNKILNEKLDEVSDKQTLVPKIEFLEVESQEIVEEINKNEEIGLEKKTYDEVEYLEEDVTNNSQPEKDPITVCLTRPKKLPRAKPIKKYLQYTEEDLRNGVEAVRNNRMSRLEAAEFYNVPRKTLVAKLKMDEESVDPAREEMYVFIKEVKTILSFTNATPYKSKISTYSCAYCTEVYFHAADDLRNHTRTNHIDERTKKVDLMMRPHAMNEILKLDVNNLICVVCCIPMDDWNGLFRHLKNTHGIVFTYAYKRVIPYILDEEPDCVLCKQHFTNYIQLDFHMNSHYDNYVCDDCGQTFISAARLKNHAKNHSKKQEAVVHKARLYYKCYHCPEKLPSERERKEHIEANHREKIKEIGCDMCGKIFNWRQYYIEHLRKVHGDRKYECTACDKKFSQNRDLRRHVESRHNGAKNHVCPMCERRYSSKAALVTHFKIHLNNNKVI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00236239; iTF_00236961;
90% Identity
iTF_00236239;
80% Identity
iTF_00236239;