Bman003579.1
Basic Information
- Insect
- Bombyx mandarina
- Gene Symbol
- bab1
- Assembly
- GCA_003987935.1
- Location
- NW:3485994-3772177[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.5e-17 1.4e-14 53.0 0.0 1 43 279 322 279 324 0.95 2 2 4.5 4.3e+03 -3.0 1.2 6 15 416 425 416 426 0.86
Sequence Information
- Coding Sequence
- ATGCCGGCTGAAGAAGATCCCGTCGCCATGGAGGACCGAGGGACTCCCCAACAGTTCTGCCTGCGATGGAACAATTATCAGAGCAACTTGACCAGCTGTTTCGATCAGCTGCTACAGACGGAACTTTTCGTCGATGTGACCCTTGCTTGCGAGGGACAGAAACTGAAAGCGCACAAGCTGGTGCTGTCGGCCTGCAGCCCGTACTTCCAGGAGTTGCTCACCGACAACCCGTGCCAGCACCCGATCATCATAATGAACAACGACATTAAATACTGTGACTTGAAGGCGGTGGTGTACTACATGTACCGCGGTGAGATAAACGTGTCCGAGGACCAGATCCCGGCTCTGTTGAAAGTGGCCGAGGCGTTGAAGATCCGCGGCCTCACGGACGTGAATGCGTCGTCGACTCTGGTCGGCGCCGAGGCGCGAGCCAGCAAGCGCGCCGCAAGTCGCGAGCGGTCCCCTGGGCGAGCCCGACGCCGCCTCTCGGAAAGTCGCGGGCGACGCGCCTCCACCCCAAGTCCCGCTCCGAGCGCCGAGCCCGCCGCTGCAGCCGCACCGCCCGCTCCGCCTGCTCCGCCGATGCCGCCAGACGACGCCGACATCCGTCCTGGCATCGCCGAGATGATCCGCGAAGAAGAAAGGGTACATGCCTATTGGTATCAGCAGgCTCGCCTCATTGAGAACTCTCACGCTTGGCTTGGACCATCCACTTCGGCTTTGGCAGACAGCTACCAATACCAGCTGCAGTCGATGTGGCAAAAATGCTGGAACACCAACCAGAACTTGGTACACAACCTGCGTTTCCGCGAACGCGGTCCTCTCAAGTCCTGGCGGCCAGAAACTATGGCTGAGGCCATTTTCTCTGTGCTGAAGGAGGGCTTGTCTCTCTCCCAAGCGGCTAGGAAGTACGACATCCCGTACCCGACGTTCGTGCTGTATGCCAACCGCGTCCATAACATGCTCGGACCCAGCGCCGATGGTGGAGCAGATCTGCGACCAAAAGGACGCGGTCGCCCACAAAGGATTCTGCTGGGCGTCTGGCCCGACGAACATATCCGTGGAGTTATCCGCGCGGTCGTATTCCGCGACACGCAGGCACCGCACGCTAATCCTCATCATCTCCGCGAACTAGAGCTGCCGACGTACCCTGCCATCACGGATGGATCACCGACACCGGCTGCATATACCGCGGTGGGGGTCGGCAATGGACGCGAAGAGCGCGTGTCTCCAAATgttgccgccgccgccgccgtagCCGCCGTGGCCCATGGGCTGCGCCGTCAGATGTGCAACATGGTGGTGGCGGCGCAGCGCCCACAGGACCAGCCGCCACTCGGCCTGCCTCCGCTGCCAATGCACTCACCGCGGCTGCCGTCACCGCTCTCCGCGAGCCTGGAATCACCAATGTGCTCCCCGAGCCAGACGCTCGAGGCCGCGAAGCCCGCCGATCCATTCCGCCCGTTCATATCGCCCCGACCTGAAAGTCGCTATGCAGAACGCGACATTATCCCGGAAATGACCGATATGGGACCGCCAAAGACACCGGTGCCGACTCGGAACGGACAGGCCGCCGGTGCTATGGAGCTGGATGGCTCCGATGACCGTTCCGACATGATATGA
- Protein Sequence
- MPAEEDPVAMEDRGTPQQFCLRWNNYQSNLTSCFDQLLQTELFVDVTLACEGQKLKAHKLVLSACSPYFQELLTDNPCQHPIIIMNNDIKYCDLKAVVYYMYRGEINVSEDQIPALLKVAEALKIRGLTDVNASSTLVGAEARASKRAASRERSPGRARRRLSESRGRRASTPSPAPSAEPAAAAAPPAPPAPPMPPDDADIRPGIAEMIREEERVHAYWYQQARLIENSHAWLGPSTSALADSYQYQLQSMWQKCWNTNQNLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGADLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDTQAPHANPHHLRELELPTYPAITDGSPTPAAYTAVGVGNGREERVSPNVAAAAAVAAVAHGLRRQMCNMVVAAQRPQDQPPLGLPPLPMHSPRLPSPLSASLESPMCSPSQTLEAAKPADPFRPFISPRPESRYAERDIIPEMTDMGPPKTPVPTRNGQAAGAMELDGSDDRSDMI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00235961;
- 90% Identity
- iTF_00235961;
- 80% Identity
- iTF_00235961;